juglab / cryoCARE_pip

PIP package of cryoCARE
BSD 3-Clause "New" or "Revised" License
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Prediction step error #37

Closed zehrea closed 1 year ago

zehrea commented 1 year ago

Hello,

The prediction step gives me error below:

cryoCARE_predict.py --conf predict_config.json 2022-10-13 11:44:53.842492: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0 Traceback (most recent call last): File "/home/exx/miniconda3/envs/cryocare_11/bin/cryoCARE_predict.py", line 174, in main() File "/home/exx/miniconda3/envs/cryocare_11/bin/cryoCARE_predict.py", line 113, in main config = json.load(f) File "/home/exx/miniconda3/envs/cryocare_11/lib/python3.8/json/init.py", line 293, in load return loads(fp.read(), File "/home/exx/miniconda3/envs/cryocare_11/lib/python3.8/json/init.py", line 357, in loads return _default_decoder.decode(s) File "/home/exx/miniconda3/envs/cryocare_11/lib/python3.8/json/decoder.py", line 337, in decode obj, end = self.raw_decode(s, idx=_w(s, 0).end()) File "/home/exx/miniconda3/envs/cryocare_11/lib/python3.8/json/decoder.py", line 355, in raw_decode raise JSONDecodeError("Expecting value", s, err.value) from None json.decoder.JSONDecodeError: Expecting value: line 7 column 16 (char 230)

What could be the problem?

Thanks, Elena

zehrea commented 1 year ago

Please disregard, I solved this error

thorstenwagner commented 1 year ago

Thanks for letting us know. Closed.

asarnow commented 1 year ago

For anyone else who sees this, you need to put True or False in quotes in your config.json files.

overwrite: "False",