Update bioimageio model export

juglab / n2v

This is the implementation of Noise2Void training.

Other

385 stars 107 forks source link

Update bioimageio model export #137

Closed veegalinova closed 1 year ago

veegalinova commented 1 year ago

add code from napari-n2v for bioimageio model export
check and fix notebook examples
add bioimageio.core dependency

jdeschamps commented 1 year ago

Awesome!

The CI doesn't pass because of the windowspwd problem... I never had the time to look at that, so I am not sure if there is an "easy" fix that could be pushed to the bioimage core. Something to ask Fynn probably. Maybe ask around at the hackathon if anyone knows?

In napari-n2v, I simply skip the bioimage.io related tests in the CI.

veegalinova commented 1 year ago

Quick googling showed that this is caused by a bug in python standard library, funny stuff... https://github.com/thonny/thonny/issues/1146, https://bugs.python.org/issue32731

For now, I will skip the test in the CI the same way as in napari-n2v. And I will also raise an issue in the bioimage repository.