search

juliamatlab / mexjulia

embedding Julia in the MATLAB process.
MIT License
52 stars 14 forks source link

Build issue with jl.config #50

Open Hadrien-Montanelli opened 7 years ago

Hadrien-Montanelli commented 7 years ago

I'm running MATLAB R2017a and Julia 0.6 on Yosemite 10.10.5.

Here is the error I get with jl.config:

>> jl.config('/Applications/Julia-0.6.app/Contents/Resources/julia/bin/julia')
         build_cflags: '-O -I"/Applications/Julia-0.6.app/Contents/Resources/julia/include/julia" -DJULIA_ENABLE_THREADING'
        build_ldflags: '-L"/Applications/Julia-0.6.app/Contents/Resources/julia/lib" -Wl,-rpath="/Applications/Julia-0.6.app/Contents/Resources/julia/lib"'
         build_ldlibs: '-ljulia -ldl'
            build_src: '/Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia.cpp'
              inc_dir: '/Applications/Julia-0.6.app/Contents/Resources/julia/include/julia'
             is_debug: 'false'
            julia_bin: '/Applications/Julia-0.6.app/Contents/Resources/julia/bin/julia'
           julia_home: '/Applications/Julia-0.6.app/Contents/Resources/julia/bin'
             lib_base: 'julia'
              lib_dir: '/Applications/Julia-0.6.app/Contents/Resources/julia/lib'
             lib_path: '/Applications/Julia-0.6.app/Contents/Resources/julia/lib/libjulia.0.6.0.dylib'
            sys_image: '/Applications/Julia-0.6.app/Contents/Resources/julia/lib/julia/sys.dylib'
    threading_enabled: 'true'

The mex command to be executed:
mex LDFLAGS='-L"/Applications/Julia-0.6.app/Contents/Resources/julia/lib" -Wl,-rpath="/Applications/Julia-0.6.app/Contents/Resources/julia/lib" $LDFLAGS' -v -largeArrayDims -outdir "/Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA" -O -I"/Applications/Julia-0.6.app/Contents/Resources/julia/include/julia" -DJULIA_ENABLE_THREADING /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia.cpp -ljulia -ldl
Verbose mode is on.
... Looking for compiler 'Xcode Clang++' ...
... Looking for environment variable 'DEVELOPER_DIR' ...No.
... Executing command 'xcode-select -print-path' ...Yes ('/Applications/Xcode.app/Contents/Developer').
... Looking for folder '/Applications/Xcode.app/Contents/Developer' ...Yes.
... Executing command 'which xcrun' ...Yes ('/usr/bin/xcrun').
... Looking for folder '/usr/bin' ...Yes.
... Executing command 'defaults read com.apple.dt.Xcode IDEXcodeVersionForAgreedToGMLicense' ...No.
... Executing command 'defaults read /Library/Preferences/com.apple.dt.Xcode IDEXcodeVersionForAgreedToGMLicense' ...Yes ('7.0').
... Executing command '
agreed=7.0 
 if echo $agreed | grep -E '[\.\"]' >/dev/null; then 
 lhs=`expr "$agreed" : '\([0-9]*\)[\.].*'` 
  rhs=`expr "$agreed" : '[0-9]*[\.]\(.*\)$'` 
 if echo $rhs | grep -E '[\."]' >/dev/null; then 
 rhs=`expr "$rhs" : '\([0-9]*\)[\.].*'` 
 fi 
 if [ $lhs -gt 4 ] || ( [ $lhs -eq 4 ] && [ $rhs -ge 3 ] ); then 
 echo $agreed 
 else 
 exit 1
 fi 
 fi' ...Yes ('7.0').
... Executing command 'xcode-select -print-path' ...Yes ('/Applications/Xcode.app/Contents/Developer').
... Looking for folder '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk' ...No.
... Looking for folder '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk' ...No.
... Looking for folder '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk' ...Yes.
... Executing command 'xcode-select -print-path' ...Yes ('/Applications/Xcode.app/Contents/Developer').
... Looking for folder '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk' ...No.
... Looking for folder '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk' ...No.
... Looking for folder '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk' ...Yes.
... Executing command 'echo /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk | rev | cut -c1-10 | rev | egrep -oh '[0-9]+\.[0-9]+'' ...Yes ('10.11').
Found installed compiler 'Xcode Clang++'.
Options file details
-------------------------------------------------------------------
    Compiler location: /Applications/Xcode.app/Contents/Developer
    Options file: /Users/montanelli/Library/Application Support/MathWorks/MATLAB/R2017a/mex_C++_maci64.xml
    CMDLINE200 : /usr/bin/xcrun -sdk macosx10.11 clang++ -L"/Applications/Julia-0.6.app/Contents/Resources/julia/lib" -Wl,-rpath="/Applications/Julia-0.6.app/Contents/Resources/julia/lib" -Wl,-twolevel_namespace -undefined error -arch x86_64 -mmacosx-version-min=10.11 -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -framework Cocoa -bundle  -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" -stdlib=libc++ -O -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/mexjulia.o /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/cpp_mexapi_version.o   -ljulia  -ldl   -L"/Applications/MATLAB_R2017a.app/bin/maci64" -lmx -lmex -lmat -o /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia.mexmaci64
    CXX : /usr/bin/xcrun -sdk macosx10.11 clang++
    DEFINES : -DTARGET_API_VERSION=700  -DJULIA_ENABLE_THREADING  -DMX_COMPAT_64  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE 
    MATLABMEX : -DMATLAB_MEX_FILE 
    CXXFLAGS : -fno-common -arch x86_64 -mmacosx-version-min=10.11 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -fobjc-arc -std=c++11 -stdlib=libc++
    INCLUDE : -I"/Applications/Julia-0.6.app/Contents/Resources/julia/include/julia"  -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include"
    CXXOPTIMFLAGS : -O2 -DNDEBUG
    CXXDEBUGFLAGS : -g
    LDXX : /usr/bin/xcrun -sdk macosx10.11 clang++
    LDFLAGS : -L"/Applications/Julia-0.6.app/Contents/Resources/julia/lib" -Wl,-rpath="/Applications/Julia-0.6.app/Contents/Resources/julia/lib" -Wl,-twolevel_namespace -undefined error -arch x86_64 -mmacosx-version-min=10.11 -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -framework Cocoa -bundle  -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" -stdlib=libc++
    LDBUNDLE : -bundle 
    LINKEXPORT : -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map"
    LINKLIBS : -ljulia  -ldl   -L"/Applications/MATLAB_R2017a.app/bin/maci64" -lmx -lmex -lmat
    LDOPTIMFLAGS : -O
    LDDEBUGFLAGS : -g
    OBJEXT : .o
    LDEXT : .mexmaci64
    DEVELOPER_DIR_CHECK : 
    XCODE_DIR : /Applications/Xcode.app/Contents/Developer
    XCRUN_DIR : /usr/bin
    XCODE_AGREED_VERSION : 7.0
    ISYSROOT : /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
    SDKVER : 10.11
    MATLABROOT : /Applications/MATLAB_R2017a.app
    ARCH : maci64
    SRC : /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia.cpp;/Applications/MATLAB_R2017a.app/extern/version/cpp_mexapi_version.cpp
    OBJ : /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/mexjulia.o;/var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/cpp_mexapi_version.o
    OBJS : /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/mexjulia.o /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/cpp_mexapi_version.o 
    SRCROOT : /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia
    DEF : /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/mexjulia.def
    EXP : /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia.exp
    LIB : /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia.lib
    EXE : /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia.mexmaci64
    ILK : /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia.ilk
    MANIFEST : /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia.mexmaci64.manifest
    TEMPNAME : /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia
    EXEDIR : /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/
    EXENAME : mexjulia
    OPTIM : -O2 -DNDEBUG
    LINKOPTIM : -O
    CMDLINE100_0 : /usr/bin/xcrun -sdk macosx10.11 clang++ -c -DTARGET_API_VERSION=700  -DJULIA_ENABLE_THREADING  -DMX_COMPAT_64  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE  -I"/Applications/Julia-0.6.app/Contents/Resources/julia/include/julia"  -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.11 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -fobjc-arc -std=c++11 -stdlib=libc++ -O2 -DNDEBUG /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia.cpp -o /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/mexjulia.o
    CMDLINE100_1 : /usr/bin/xcrun -sdk macosx10.11 clang++ -c -DTARGET_API_VERSION=700  -DJULIA_ENABLE_THREADING  -DMX_COMPAT_64  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE  -I"/Applications/Julia-0.6.app/Contents/Resources/julia/include/julia"  -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.11 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -fobjc-arc -std=c++11 -stdlib=libc++ -O2 -DNDEBUG /Applications/MATLAB_R2017a.app/extern/version/cpp_mexapi_version.cpp -o /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/cpp_mexapi_version.o
    CMDLINE300_0 : rm -f /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/mexjulia.o
    CMDLINE300_1 : rm -f /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/cpp_mexapi_version.o
-------------------------------------------------------------------
Building with 'Xcode Clang++'.
/usr/bin/xcrun -sdk macosx10.11 clang++ -c -DTARGET_API_VERSION=700  -DJULIA_ENABLE_THREADING  -DMX_COMPAT_64  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE  -I"/Applications/Julia-0.6.app/Contents/Resources/julia/include/julia"  -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.11 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -fobjc-arc -std=c++11 -stdlib=libc++ -O2 -DNDEBUG /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia.cpp -o /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/mexjulia.o
/usr/bin/xcrun -sdk macosx10.11 clang++ -c -DTARGET_API_VERSION=700  -DJULIA_ENABLE_THREADING  -DMX_COMPAT_64  -DUSE_MEX_CMD   -DMATLAB_MEX_FILE  -I"/Applications/Julia-0.6.app/Contents/Resources/julia/include/julia"  -I"/Applications/MATLAB_R2017a.app/extern/include" -I"/Applications/MATLAB_R2017a.app/simulink/include" -fno-common -arch x86_64 -mmacosx-version-min=10.11 -fexceptions -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -fobjc-arc -std=c++11 -stdlib=libc++ -O2 -DNDEBUG /Applications/MATLAB_R2017a.app/extern/version/cpp_mexapi_version.cpp -o /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/cpp_mexapi_version.o
/usr/bin/xcrun -sdk macosx10.11 clang++ -L"/Applications/Julia-0.6.app/Contents/Resources/julia/lib" -Wl,-rpath="/Applications/Julia-0.6.app/Contents/Resources/julia/lib" -Wl,-twolevel_namespace -undefined error -arch x86_64 -mmacosx-version-min=10.11 -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -framework Cocoa -bundle  -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" -stdlib=libc++ -O -Wl,-exported_symbols_list,"/Applications/MATLAB_R2017a.app/extern/lib/maci64/mexFunction.map" /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/mexjulia.o /var/folders/06/04hqnrr559l_w_vfs27k3yrw0000gn/T/mex_71500059142805_5703/cpp_mexapi_version.o   -ljulia  -ldl   -L"/Applications/MATLAB_R2017a.app/bin/maci64" -lmx -lmex -lmat -o /Users/montanelli/Dropbox/HM/WORK/MATLAB/MEXJULIA/mexjulia.mexmaci64
Error using mex
ld: unknown option: -rpath=/Applications/Julia-0.6.app/Contents/Resources/julia/lib
clang: error: linker command failed with exit code 1 (use -v to see invocation)

Error in jl.build (line 288)
            eval(mex_cmd);

Error in jl.config (line 268)
            jl.build;
twadleigh commented 7 years ago

The relevant line seems to be:

ld: unknown option: -rpath=/Applications/Julia-0.6.app/Contents/Resources/julia/lib

Could it be that the compiler doesn't like the =? Maybe try replacing it with a space here: https://github.com/twadleigh/mexjulia/blob/26c729ed5e77030452f5de629bf68ee3ccc88b65/jl.m#L232

Hadrien-Montanelli commented 7 years ago

Yes, it works now. Thank you @twadleigh!