Open ChrisRackauckas opened 6 years ago
I am getting a crash after the first call returns, just doing jl.eval('2+2'). This is on CentOS with the COPR build.
jl.eval('2+2')
Build:
>> jl.config build_cflags: '-O -I"/usr/include/julia" -DJULIA_ENABLE_THREADING' build_ldflags: '-L"/usr/bin/../lib64" -Wl,-rpath="/usr/bin/../lib64"' build_ldlibs: '-ljulia -ldl' build_src: '/home/crackauc/.julia/mexjulia/mexjulia.cpp' inc_dir: '/usr/include/julia' is_debug: 'false' julia_bin: '/usr/bin/julia' julia_home: '/usr/bin' lib_base: 'julia' lib_dir: '/usr/bin/../lib64' lib_path: '/usr/bin/../lib64/libjulia.so.0.6' sys_image: '/usr/lib64/julia/sys.so' threading_enabled: 'true' /home/crackauc/.julia/mexjulia is not on the MATLAB path. Adding it and saving... Warning: Unable to save path to file '/usr/local/MATLAB/R2017b/toolbox/local/pathdef.m'. You can save your path to a different location by calling SAVEPATH with an input argument that specifies the full path. For MATLAB to use that path in future sessions, save the path to 'pathdef.m' in your MATLAB startup folder. > In savepath (line 176) In jl.config (line 264) The mex command to be executed: mex LDFLAGS='-L"/usr/bin/../lib64" -Wl,-rpath="/usr/bin/../lib64" $LDFLAGS' -v -largeArrayDims -outdir "/home/crackauc/.julia/mexjulia" -O -I"/usr/include/julia" -DJULIA_ENABLE_THREADING /home/crackauc/.julia/mexjulia/mexjulia.cpp -ljulia -ldl Verbose mode is on. ... Looking for compiler 'g++' ... ... Executing command 'which g++' ...Yes ('/usr/bin/g++'). ... Executing command 'g++ -print-file-name=libstdc++.so' ...Yes ('/usr/lib/gcc/x86_64-redhat-linux/4.8.5/libstdc++.so'). Found installed compiler 'g++'. Options file details ------------------------------------------------------------------- Compiler location: /usr/bin/g++ Options file: /home/crackauc/.matlab/R2017b/mex_C++_glnxa64.xml CMDLINE2 : /usr/bin/g++ -L"/usr/bin/../lib64" -Wl,-rpath="/usr/bin/../lib64" -pthread -Wl,--no-undefined -shared -O -Wl,--version-script,"/usr/local/MATLAB/R2017b/extern/lib/glnxa64/c_exportsmexfileversion.map" /tmp/mex_74651827174027896_26765/mexjulia.o /tmp/mex_74651827174027896_26765/cpp_mexapi_version.o -ljulia -ldl -Wl,-rpath-link,/usr/local/MATLAB/R2017b/bin/glnxa64 -L"/usr/local/MATLAB/R2017b/bin/glnxa64" -lmx -lmex -lmat -lm -lstdc++ -o /home/crackauc/.julia/mexjulia/mexjulia.mexa64 CXX : /usr/bin/g++ DEFINES : -DJULIA_ENABLE_THREADING -DMX_COMPAT_64 -DUSE_MEX_CMD -D_GNU_SOURCE -DMATLAB_MEX_FILE MATLABMEX : -DMATLAB_MEX_FILE CFLAGS : -fexceptions -fPIC -fno-omit-frame-pointer -pthread CXXFLAGS : -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 INCLUDE : -I"/usr/include/julia" -I"/usr/local/MATLAB/R2017b/extern/include" -I"/usr/local/MATLAB/R2017b/simulink/include" CXXOPTIMFLAGS : -O -DNDEBUG CXXDEBUGFLAGS : -g LDXX : /usr/bin/g++ LDFLAGS : -L"/usr/bin/../lib64" -Wl,-rpath="/usr/bin/../lib64" -pthread -Wl,--no-undefined LDTYPE : -shared LINKEXPORT : -Wl,--version-script,"/usr/local/MATLAB/R2017b/extern/lib/glnxa64/mexFunction.map" LINKEXPORTVER : -Wl,--version-script,"/usr/local/MATLAB/R2017b/extern/lib/glnxa64/c_exportsmexfileversion.map" LINKLIBS : -ljulia -ldl -Wl,-rpath-link,/usr/local/MATLAB/R2017b/bin/glnxa64 -L"/usr/local/MATLAB/R2017b/bin/glnxa64" -lmx -lmex -lmat -lm -lstdc++ LDOPTIMFLAGS : -O LDDEBUGFLAGS : -g MWCPPLIB : "/usr/local/MATLAB/R2017b/sys/os/glnxa64/libstdc++.so.6" OBJEXT : .o LDEXT : .mexa64 SETENV : CC="gcc" CXX="/usr/bin/g++" CFLAGS="-fexceptions -fPIC -fno-omit-frame-pointer -pthread -DJULIA_ENABLE_THREADING -DMX_COMPAT_64 -DUSE_MEX_CMD -D_GNU_SOURCE -DMATLAB_MEX_FILE " CXXFLAGS="-fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -DJULIA_ENABLE_THREADING -DMX_COMPAT_64 -DUSE_MEX_CMD -D_GNU_SOURCE -DMATLAB_MEX_FILE " COPTIMFLAGS="-O -DNDEBUG" CXXOPTIMFLAGS="-O -DNDEBUG" CDEBUGFLAGS="-g" CXXDEBUGFLAGS="-g" LD="gcc" LDXX="/usr/bin/g++" LDFLAGS="-L"/usr/bin/../lib64" -Wl,-rpath="/usr/bin/../lib64" -pthread -Wl,--no-undefined -shared -ljulia -ldl -Wl,-rpath-link,/usr/local/MATLAB/R2017b/bin/glnxa64 -L"/usr/local/MATLAB/R2017b/bin/glnxa64" -lmx -lmex -lmat -lm -lstdc++ -Wl,--version-script,"/usr/local/MATLAB/R2017b/extern/lib/glnxa64/mexFunction.map"" LDDEBUGFLAGS="-g" GCC : /usr/bin/g++ CPPLIB_DIR : /usr/lib/gcc/x86_64-redhat-linux/4.8.5/libstdc++.so MATLABROOT : /usr/local/MATLAB/R2017b ARCH : glnxa64 SRC : "/home/crackauc/.julia/mexjulia/mexjulia.cpp";"/usr/local/MATLAB/R2017b/extern/version/cpp_mexapi_version.cpp" OBJ : /tmp/mex_74651827174027896_26765/mexjulia.o;/tmp/mex_74651827174027896_26765/cpp_mexapi_version.o OBJS : /tmp/mex_74651827174027896_26765/mexjulia.o /tmp/mex_74651827174027896_26765/cpp_mexapi_version.o SRCROOT : /home/crackauc/.julia/mexjulia/mexjulia DEF : /tmp/mex_74651827174027896_26765/mexjulia.def EXP : /home/crackauc/.julia/mexjulia/mexjulia.exp LIB : /home/crackauc/.julia/mexjulia/mexjulia.lib EXE : /home/crackauc/.julia/mexjulia/mexjulia.mexa64 ILK : /home/crackauc/.julia/mexjulia/mexjulia.ilk MANIFEST : /home/crackauc/.julia/mexjulia/mexjulia.mexa64.manifest TEMPNAME : /home/crackauc/.julia/mexjulia/mexjulia EXEDIR : /home/crackauc/.julia/mexjulia/ EXENAME : mexjulia OPTIM : -O -DNDEBUG LINKOPTIM : -O CMDLINE1_0 : /usr/bin/g++ -c -DJULIA_ENABLE_THREADING -DMX_COMPAT_64 -DUSE_MEX_CMD -D_GNU_SOURCE -DMATLAB_MEX_FILE -I"/usr/include/julia" -I"/usr/local/MATLAB/R2017b/extern/include" -I"/usr/local/MATLAB/R2017b/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG "/home/crackauc/.julia/mexjulia/mexjulia.cpp" -o /tmp/mex_74651827174027896_26765/mexjulia.o CMDLINE1_1 : /usr/bin/g++ -c -DJULIA_ENABLE_THREADING -DMX_COMPAT_64 -DUSE_MEX_CMD -D_GNU_SOURCE -DMATLAB_MEX_FILE -I"/usr/include/julia" -I"/usr/local/MATLAB/R2017b/extern/include" -I"/usr/local/MATLAB/R2017b/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG "/usr/local/MATLAB/R2017b/extern/version/cpp_mexapi_version.cpp" -o /tmp/mex_74651827174027896_26765/cpp_mexapi_version.o ------------------------------------------------------------------- Building with 'g++'. /usr/bin/g++ -c -DJULIA_ENABLE_THREADING -DMX_COMPAT_64 -DUSE_MEX_CMD -D_GNU_SOURCE -DMATLAB_MEX_FILE -I"/usr/include/julia" -I"/usr/local/MATLAB/R2017b/extern/include" -I"/usr/local/MATLAB/R2017b/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG "/home/crackauc/.julia/mexjulia/mexjulia.cpp" -o /tmp/mex_74651827174027896_26765/mexjulia.o /usr/bin/g++ -c -DJULIA_ENABLE_THREADING -DMX_COMPAT_64 -DUSE_MEX_CMD -D_GNU_SOURCE -DMATLAB_MEX_FILE -I"/usr/include/julia" -I"/usr/local/MATLAB/R2017b/extern/include" -I"/usr/local/MATLAB/R2017b/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG "/usr/local/MATLAB/R2017b/extern/version/cpp_mexapi_version.cpp" -o /tmp/mex_74651827174027896_26765/cpp_mexapi_version.o /usr/bin/g++ -L"/usr/bin/../lib64" -Wl,-rpath="/usr/bin/../lib64" -pthread -Wl,--no-undefined -shared -O -Wl,--version-script,"/usr/local/MATLAB/R2017b/extern/lib/glnxa64/c_exportsmexfileversion.map" /tmp/mex_74651827174027896_26765/mexjulia.o /tmp/mex_74651827174027896_26765/cpp_mexapi_version.o -ljulia -ldl -Wl,-rpath-link,/usr/local/MATLAB/R2017b/bin/glnxa64 -L"/usr/local/MATLAB/R2017b/bin/glnxa64" -lmx -lmex -lmat -lm -lstdc++ -o /home/crackauc/.julia/mexjulia/mexjulia.mexa64 MEX completed successfully.
And then:
jl.eval('2+2') [crackauc@crackauc2 mexjulia]$ matlab WARNING: deprecated syntax "typealias mwSize UInt" at /home/crackauc/.julia/mexjulia/jl/mxarray.jl:38. Use "const mwSize = UInt" instead. WARNING: deprecated syntax "typealias mwIndex Int" at /home/crackauc/.julia/mexjulia/jl/mxarray.jl:39. Use "const mwIndex = Int" instead. WARNING: deprecated syntax "typealias mxChar UInt16" at /home/crackauc/.julia/mexjulia/jl/mxarray.jl:40. Use "const mxChar = UInt16" instead. WARNING: deprecated syntax "typealias mxClassID Cint" at /home/crackauc/.julia/mexjulia/jl/mxarray.jl:41. Use "const mxClassID = Cint" instead. WARNING: deprecated syntax "typealias mxComplexity Cint" at /home/crackauc/.julia/mexjulia/jl/mxarray.jl:42. Use "const mxComplexity = Cint" instead. WARNING: deprecated syntax "typealias Pairs Union{Pair,NTuple{2}}" at /home/crackauc/.julia/mexjulia/jl/mxarray.jl:498. Use "const Pairs = Union{Pair,NTuple{2}}" instead. WARNING: deprecated syntax "typealias Pairs NTuple{2}" at /home/crackauc/.julia/mexjulia/jl/mxarray.jl:500. Use "const Pairs = NTuple{2}" instead. Segmentation fault (core dumped)
I am getting a crash after the first call returns, just doing
jl.eval('2+2'). This is on CentOS with the COPR build.Build:
And then: