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julianfaraway / brinla

Bayesian Regression with INLA
GNU General Public License v3.0
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Error: Failed to install 'brinla': package ‘INLA’ is not available #3

Open fredriklohaa opened 4 years ago

fredriklohaa commented 4 years ago

Dear Prof. Julian Faraway,

I am trying to install your package and am using the command:

with_libpaths(new="C:/Program Files/R/R-3.6.1/library/",install_github("julianfaraway/brinla")) I get the error message:

Error: Failed to install 'brinla' from GitHub: (converted from warning) package ‘INLA’ is not available (for R version 3.6.1)

Yet I have INLA installed on my computer: This is INLA_19.09.18 built 2019-09-18 17:52:48 UTC. See www.r-inla.org/contact-us for how to get help.

Do you know what is wrong?

julianfaraway commented 4 years ago

Maybe this is because you are not using the install method recommended in the README?

rancoper commented 3 years ago

Dear Prof. Julian Faraway @julianfaraway

Using the install method in the README was not enough to install brinla. Look below the message in the Console:

remotes::install_github("julianfaraway/brinla") Downloading GitHub repo julianfaraway/brinla@HEAD Skipping 1 packages not available: INLA ✓ checking for file ‘/private/var/folders/j3/z0zylnbx7yx2jsdv8bg82gk00000gn/T/Rtmp4RJ8ZL/remotes39ee6e7a60a5/julianfaraway-brinla-338abb5/DESCRIPTION’ ... ─ preparing ‘brinla’: ✓ checking DESCRIPTION meta-information ... ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ looking to see if a ‘data/datalist’ file should be added ─ building ‘brinla_0.1.0.tar.gz’ installing source package ‘brinla’ ... using staged installation R data * moving datasets to lazyload DB byte-compile and prepare package for lazy loading Error: (converted from warning) package ‘sp’ was built under R version 3.6.2 Execution halted ERROR: lazy loading failed for package ‘brinla’ ** removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/brinla’ Error: Failed to install 'brinla' from GitHub: (converted from warning) installation of package ‘/var/folders/j3/z0zylnbx7yx2jsdv8bg82gk00000gn/T//Rtmp4RJ8ZL/file39ee245f294d/brinla_0.1.0.tar.gz’ had non-zero exit status

Do you know what is wrong?

Ps: I also tried with library(devtools)
install_github("julianfaraway/brinla")

julianfaraway commented 3 years ago

R is currently at version 4.0.2 but you are using a version of sp built for 3.6.2. You could try updating. Also it is best to install INLA first - the log implies you have not done this yet.

sandyherho commented 3 years ago

Prof. @julianfaraway , I got the same problem even though I followed exactly the README file and use R version 4.0.2. Here is the error message:

Error: (converted from warning) package 'Matrix' was built under R version 4.0.3 Execution halted ERROR: lazy loading failed for package 'brinla' removing 'D:/Program Files/R/R-4.0.2/library/brinla' Error: Failed to install 'brinla' from GitHub: (converted from warning) installation of package ‘C:/Users/User/AppData/Local/Temp/RtmpWovSD0/fileb184ebe6742/brinla_0.1.0.tar.gz’ had non-zero exit status

Is the brinla package use another version of Matrix package? Thanks.

julianfaraway commented 3 years ago

I do not think this is the same problem and it does not seem to be a problem with brinla. It seems you are using a version of Matrix for 4.0.3 whereas you have 4.0.2 installed. The error appears to result from this mismatch. I suggest you update your version of R to 4.0.3.