DISOPRED/SPPIDER integration

[julianstanley]

Should be straightforward. Need to think about file format.

This should be split into 3 files.

• 1 file should have disorder and disorder score from disopred (for disorder_res and disordScore_res)

• 1 file should have protein binding call and score from disopred (for protBindDISOPRED_res and protBindDISOPREDscore_res)

1 file should have protein binding call and score from sppider (for protBindSPPIDER_res)\

Every files needs: 1) PDB file name (a1) 2) AA (a2) 3) AA position in the structure (a3)

Data columns: 4) SPPIDER call (a4) 5) DISOPRED disordered call (a5) 6) DISOPRED disordered score (a6) 7) DISOPRED protein binding call (a7) 8) DISOPRED protein binding score (a8)

[julianstanley]

Create input files from the original concatenated file:

cut -d, -f1,2,3,7,8 disopred_all.csv | tail -n +2 > disopred_binding.csv, etc.

cut to remove specific columns. tail -n +2 to remove header. Input file should not have a header. (Consider adding a check for that in the future so files with headers work as well)