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juliema
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aTRAM
BSD 3-Clause "New" or "Revised" License
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Could you help me figure out what causes the error?
#320
luckyvivi
opened
1 year ago
0
atram_preprocessor.py taking a lot of time to load .fastq.gz files
#319
RominaSSBatista
closed
1 year ago
1
TypeError: 'NoneType' object is not subscriptable
#318
RominaSSBatista
closed
1 year ago
1
[Question] How to use aTRAM stitcher? (no tutorial available / help menu unclear)
#317
ClaraKoehne
opened
1 year ago
0
Only using one CPU for atram_preprocessor.py
#316
mchaney1
opened
1 year ago
0
## How to continue the uncompleted tasks?
#315
laiqiang0728
opened
2 years ago
5
[Errno 2] No such file or directory
#314
danielyao12
opened
2 years ago
2
using a different genetic code on stitcher
#313
jacksonhturner
opened
2 years ago
1
stitcher does not recognise contig file
#312
Upasana1991
opened
2 years ago
0
how to merge many .fa files to one single target file containing list of amino acids
#311
Upasana1991
opened
2 years ago
2
conda installation
#310
jacksonhturner
closed
2 years ago
0
Dist utils is being removed in Python 3.12
#309
rafelafrance
opened
2 years ago
0
Abyss assembler issue: Missing files in temp directory
#308
rafelafrance
opened
2 years ago
18
Install in conda environment
#307
RvV1979
opened
2 years ago
2
meaning of node number?
#306
juliadupin
opened
2 years ago
0
Spack
#305
rdemoya
closed
3 years ago
0
timeout error in atram.py
#304
senramvx
opened
3 years ago
2
Missing modules
#303
senramvx
closed
2 years ago
6
reciprocal blast search and e-value cutoffs
#302
rdemoya
closed
3 years ago
0
Catch TimeoutExpired error for subprocesses #298
#301
rafelafrance
closed
3 years ago
0
Open database in readonly mode for atram.py
#300
rafelafrance
closed
3 years ago
1
atram_preprocessor TypeError: 'NoneType' object is not subscriptable
#299
n-oury
closed
3 years ago
6
ERROR: Exception: [Errno 2] No such file or directory: '/tmp/atram_bku5sgqt/lib_des-1S_uce-5k-probes.fasta_01_owavb3if/trinity.Trinity.fasta'
#298
liugang9988
opened
3 years ago
10
assembling large number of loci (UCEs)
#297
MareikeJaniak
closed
3 years ago
4
add --np flag to abyss to tell it how many cpus to use
#296
juliema
closed
3 years ago
3
Preprocessing step very slow after update to v2.3.3
#295
MareikeJaniak
closed
3 years ago
5
sqlite3.OperationalError: disk I/O error
#294
nomascus
closed
3 years ago
10
add new parameter to abyss optios
#293
juliema
closed
3 years ago
1
make library shuffle and option -- not the default
#292
juliema
closed
3 years ago
0
upgrade to latest Spades version
#291
juliema
opened
4 years ago
0
'NoneType' object has no attribute 'debug'
#290
tandermann
closed
3 years ago
2
'stitcher' required files are not documented
#289
sestaton
closed
4 years ago
29
--timeout 0 exits immediately
#288
sestaton
closed
4 years ago
2
LOGGER variable is not inherited to child processes
#287
Ulises-Rosas
closed
4 years ago
7
aTRAM/2.3.0 spades and python2 compatibility issues
#286
HeatherKates
closed
3 years ago
1
Change integer arguments to be explicit as to what is acceptable
#285
rafelafrance
closed
4 years ago
0
v2.3.0 --gzip option not working
#284
HeatherKates
closed
4 years ago
4
Abyss is erroring out
#283
rafelafrance
closed
4 years ago
1
Too many files open
#282
rafelafrance
closed
4 years ago
1
Run --query-split jobs in parallel
#281
rafelafrance
closed
4 years ago
0
an alternative way for installation was setted up
#280
Ulises-Rosas
closed
4 years ago
3
Add more parameter options for abyss-pe
#279
adsweet
closed
4 years ago
4
add in the --careful option for SPAdes
#278
juliema
closed
4 years ago
0
Look at shrinking logger output
#277
rafelafrance
closed
4 years ago
1
incompatibility issue with python 3.7?
#276
juliema
closed
4 years ago
2
blast only atram not working
#275
juliema
closed
4 years ago
0
Find an alternative to SQLite
#274
rafelafrance
closed
4 years ago
0
Allow wildcards and lists of files in the preprocessor input files.
#273
rafelafrance
closed
4 years ago
0
atram_preprocessor.py error with multiple fastq files
#272
MareikeJaniak
closed
4 years ago
5
atram.py, nothing is assembling. spades error
#271
HeatherKates
closed
4 years ago
3
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