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juliencarponcy / trialexp

MIT License
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Folder refactor #23

Closed teristam closed 1 year ago

teristam commented 1 year ago

This PR contains refactoring of folder names and workflow so that it is easier to work with snakemake

  1. Change the folder name from workflows to workflow because Snakemake will automatically search for a folder named workflow by default. In this way, we do not need to specify the name of the default workflow every time we run Snakemake
  2. Combine the pycontrol workflow and spike sorting workflow together in a master workflow file called Snakefile
  3. Numerous other minor fixes to cater for inconsistencies in task name and account for case where no event can be found in a trial (e.g. spout touch)
teristam commented 1 year ago

I don't know whether that will create merging conflicts with my current spike_sorting branch. Can you check or deal with the merging if need be?

Sure! I will help resolve the conflict and help merge your new change later!