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junchaoshi / sports1.1

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
GNU General Public License v3.0
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tRNA annotation #16

Closed xiaoyunguo closed 3 years ago

xiaoyunguo commented 3 years ago

Hi, Thanks so much for answering my previous questions. Another question regarding tRNA annotation. What's the criteria for annotating a read as a 3' or 5' end tRNA?

Thanks

junchaoshi commented 3 years ago

As stated in the paper, the tsRNA annotation related to the tRNA loci where they are derived from (5’ terminus, 3’ terminus, 3’CCA end, etc.). The mapping criteria are based on the mismatch number the users selected.