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junchaoshi / sports1.1

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
GNU General Public License v3.0
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mt-tRNA annotation file #30

Closed BIGRICEgo closed 11 months ago

BIGRICEgo commented 1 year ago

Hi Junchao,

I have only one small question regarding the Human precompiled database you provided. I noticed that the file hg19-mt_tRNAs.fa contains 29 sequences, but when I searched mitotRNAdb, I only found 22 results. Could you please explain why there is a discrepancy? Additionally, I'm just wondering whether you have plans to provide a precompiled database for hg38 in the future?

Thank you for your help and expertise.

Best regards, Arya

junchaoshi commented 1 year ago

Hi Arya,

The 7 mt-tRNA variants in the reference file are collected from the subspecies to maximize the mapping rate. You may remove the last 7 sequences in the mt-tRNA reference file if you would like to. And Yes, the updated precompiled database is on the schedule list.

My very best, Junchao