not mature-tRNA but pre-tRNA

junchaoshi / sports1.1

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs

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not mature-tRNA but pre-tRNA #34

Closed maturityyuan closed 1 year ago

maturityyuan commented 1 year ago

Hi, I would like to consult why the results is not contain match pre-tRNA information the operation is here : sports.pl -i /etc/SRR/245out.fastq -p 4 -g /etc/SRR/UCSC/rn6/Sequence/BowtieIndex/genome -t /etc/SRR/GtRNAdb/rn5-tRNAs -M 1 -o /etc/SRR/output/ Thank you for you attention Best wishes!

junchaoshi commented 1 year ago

Hi,

The current SPORTS version only annotates the tsRNAs containing the intron region from pre-tRNAs, since the pre-tRNA-header and -tail sequences are not contained in the GtRNAdb.