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junchaoshi / sports1.1

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
GNU General Public License v3.0
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Summaries don't sumup #4

Closed ConYel closed 5 years ago

ConYel commented 5 years ago

I was checking some resulted summaries and while I was trying to find the sum up of "matched to genome reads" were correct and I found that it is different than the one it is typed in the "summary.txt". Could you have a look on that? random2_summary.txt random1_summary.txt

These files have been produced from original summaries files using grep for only the "Match_Genome" entries

junchaoshi commented 5 years ago

two thing you need to pay attetion: GtRNAdb-tRNA_Match_Genome contains the subtype of tRNA so the subtype reads will not sum up; sometimes the reads are rounded up particularly for those mulit-loci RNAs.

ConYel commented 5 years ago

Ok thanks, still there is a miscalculation of ~11 reads

junchaoshi commented 5 years ago

the second point as I metioned. Please read carefully.