paired end small RNA-Seq?

junchaoshi / sports1.1

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs

GNU General Public License v3.0

45 stars 16 forks source link

Open zhumengyan opened 5 years ago

zhumengyan commented 5 years ago

Dear Shi, if I have a paired end small RNA-Seq data, can I analysis it using SPORTS?

junchaoshi commented 5 years ago

Hi zhumengyan,

Since SPORT1.0 was based on bowtie1, technically it do not support paired end rna seq data, but you can run the data as single end ones.