Closed sunhaifeng123 closed 4 years ago
Hi Haifeng,
The tRNA annotation should follow the GtRNAdb naming system, such as:
>Mus_musculus_tRNA-Ala-AGC-1-1 (tRNAscan-SE ID: chr13.trna91) Ala (AGC) 72 bp Sc: 85.3 chr13:21242570-21242641 (+)
The shortest version should be:
>Mus_musculus_tRNA-Ala-AGC-1-1 Ala (AGC) 72 bp
And a new version of SPORTS will release soon which will have a better annotation on tRNA. :)
My best, Junchao
Dear Junchao, Thank you very much! and looking forward to a better SPORTS! Best wishes Haifeng
Hi Haifeng, mt_tRNA database for mouse and human have updated and more species will update soon! Please update the software and the annotation databases as well.
My best, Junchao
Hi: Thanks very much for your work, Sports1.0 is very nice and useful. My species genome is mm10, and I think some tsRNAs are derived from tRNA. But when I add the MT-tRNA sequence into mm10-tRNAs.fa like this:
and then run sports.pl. The result is like:
which is not my expectation. I dont know how to solve this problem. Can you give me some advices?
Thank you in andvance for any help! Best wishes
Haifeng Sun 2020.01.10