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junchaoshi / sports1.1

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
GNU General Public License v3.0
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Compiling annotation database by user #9

Closed louismtwu closed 4 years ago

louismtwu commented 4 years ago

Hi Junchao,

I would like to know what's different of the Rfam ncRNA db between ensemblgenomes and Rfam database in the section of "Instruction for compiling annotation database by user" ? Which one should we follow? X_rfam_ncrna.fa or X_rfam.fa? Shall we just choice one for the ncRNA from rfam db?

Download and extract the noncoding RNA sequences in .fa format from Rfam database (http://ensemblgenomes.org/) and put the file X_rfam_ncrna.fa into the defined folder address: ; (optional)

Download and extract the noncoding RNA sequences belong to the species in .fa format from Rfam database (https://rfam.xfam.org/) and put the file X_rfam.fa into the defined folder address: ; (optional)

Thank you for your help.

Cheers, Louis

junchaoshi commented 4 years ago

It's a typo. Fixed. Thanks for figuring it out.