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jungmannlab / picasso

A collection of tools for painting super-resolution images
https://picassosr.readthedocs.io/en/latest/?badge=latest
MIT License
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Issue on Mask Submenu #143

Closed gwisna closed 3 years ago

gwisna commented 4 years ago

Description

I am trying to mask my render result using "Mask" submenu. But, I obtained some errors when trying to open the mask submenu.

What I Did

image

(picasso378) C:\Users\wisna\Documents\picasso>python -m picasso render
[Errno 2] No such file or directory: 'D:/DNA-PAINT/20201016_Bima_Bayou_PEG10kg4C_2p5nM_2/Cropped_Bima_Bayou_PEG10kg4C_2p5nM_2_TIRF_300ms_30percent_15Kframes_locs_201017_134951_drift.txt'
Error in sys.excepthook:
Traceback (most recent call last):
  File "C:\Users\wisna\Documents\picasso\picasso\gui\render.py", line 7028, in excepthook
    errorbox.exec_()
AttributeError: 'StandardButton' object has no attribute 'exec_'

Original exception was:
Traceback (most recent call last):
  File "C:\Users\wisna\Documents\picasso\picasso\gui\render.py", line 1606, in init_dialog
    self.update_plots()
  File "C:\Users\wisna\Documents\picasso\picasso\gui\render.py", line 1715, in update_plots
    self.yedges[-1],
  File "C:\Users\wisna\anaconda3\envs\picasso378\lib\site-packages\matplotlib\__init__.py", line 1438, in inner
    return func(ax, *map(sanitize_sequence, args), **kwargs)
  File "C:\Users\wisna\anaconda3\envs\picasso378\lib\site-packages\matplotlib\axes\_axes.py", line 5521, in imshow
    resample=resample, **kwargs)
  File "C:\Users\wisna\anaconda3\envs\picasso378\lib\site-packages\matplotlib\image.py", line 909, in __init__
    **kwargs
  File "C:\Users\wisna\anaconda3\envs\picasso378\lib\site-packages\matplotlib\image.py", line 246, in __init__
    cbook._check_in_list(["upper", "lower"], origin=origin)
  File "C:\Users\wisna\anaconda3\envs\picasso378\lib\site-packages\matplotlib\cbook\__init__.py", line 2268, in _check_in_list
    .format(v, k, ', '.join(map(repr, values))))
ValueError: 'low' is not a valid value for origin; supported values are 'upper', 'lower'

Here are the packages installed on the Anaconda3 env (picasso378) C:\Users\wisna\Documents\picasso>conda list

packages in environment at C:\Users\wisna\anaconda3\envs\picasso378:

#

Name Version Build Channel

asteval 0.9.19 pypi_0 pypi blas 1.0 mkl ca-certificates 2020.10.14 0 certifi 2020.6.20 py37_0 colorama 0.4.4 pypi_0 pypi cycler 0.10.0 pypi_0 pypi freetype 2.10.4 hd328e21_0 future 0.18.2 pypi_0 pypi h5py 2.10.0 pypi_0 pypi hdf5 1.10.7 h7ebc959_0 icc_rt 2019.0.0 h0cc432a_1 icu 58.2 vc14hc45fdbb_0 [vc14] anaconda intel-openmp 2020.2 254 joblib 0.17.0 pypi_0 pypi jpeg 9b vc14h4d7706e_1 [vc14] anaconda kiwisolver 1.2.0 pypi_0 pypi libcxx 7.0.0 h1ad3211_1002 conda-forge libffi 3.2.1 ha925a31_1007 libpng 1.6.37 h2a8f88b_0 llvm-meta 7.0.0 0 conda-forge llvmlite 0.34.0 pypi_0 pypi lmfit 1.0.1 pypi_0 pypi m2w64-gcc-libgfortran 5.3.0 6 m2w64-gcc-libs 5.3.0 7 m2w64-gcc-libs-core 5.3.0 7 m2w64-gmp 6.1.0 2 m2w64-libwinpthread-git 5.0.0.4634.697f757 2 matplotlib 3.3.2 pypi_0 pypi mkl 2020.2 256 mkl-service 2.3.0 py37hb782905_0 msys2-conda-epoch 20160418 1 numba 0.51.2 pypi_0 pypi numpy 1.19.2 pypi_0 pypi numpy-base 1.19.1 py37ha3acd2a_0 openssl 1.1.1h he774522_0 perfplot 0.6.2 pypi_0 pypi picasso 0.3.1 pypi_0 pypi pillow 8.0.0 pypi_0 pypi pip 20.2.4 py37_0 pyparsing 2.4.7 pypi_0 pypi pyqt5 5.15.1 pypi_0 pypi pyqt5-sip 12.8.1 pypi_0 pypi python 3.7.9 h60c2a47_0 python-dateutil 2.8.1 pypi_0 pypi pytz 2020.1 py_0 pyyaml 5.3.1 pypi_0 pypi qt 5.9.7 vc14h73c81de_0 scikit-learn 0.23.2 pypi_0 pypi scipy 1.5.3 pypi_0 pypi setuptools 50.3.0 py37h9490d1a_1 sip 4.19.24 py37ha925a31_0 six 1.15.0 py_0 sqlite 3.33.0 h2a8f88b_0 termtables 0.1.0 pypi_0 pypi threadpoolctl 2.1.0 pypi_0 pypi tk 8.6.10 he774522_0 tqdm 4.50.2 pypi_0 pypi uncertainties 3.1.4 pypi_0 pypi vc 14.1 h0510ff6_4 vs2015_runtime 14.16.27012 hf0eaf9b_3 wheel 0.35.1 py_0 wincertstore 0.2 py37_0 xz 5.2.5 h62dcd97_0 yaml 0.2.5 he774522_0 zlib 1.2.11 h62dcd97_4

gwisna commented 4 years ago

I switched back to matplotlib 3.0.0 and the mask seems to work image

(picasso378) C:\Users\wisna\Documents\picasso>pip install matplotlib==3.0.0 Collecting matplotlib==3.0.0 Using cached matplotlib-3.0.0-cp37-cp37m-win_amd64.whl (8.9 MB) Requirement already satisfied: kiwisolver>=1.0.1 in c:\users\wisna\anaconda3\envs\picasso378\lib\site-packages (from matplotlib==3.0.0) (1.2.0) Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in c:\users\wisna\anaconda3\envs\picasso378\lib\site-packages (from matplotlib==3.0.0) (2.4.7) Requirement already satisfied: numpy>=1.10.0 in c:\users\wisna\anaconda3\envs\picasso378\lib\site-packages (from matplotlib==3.0.0) (1.19.2) Requirement already satisfied: cycler>=0.10 in c:\users\wisna\anaconda3\envs\picasso378\lib\site-packages (from matplotlib==3.0.0) (0.10.0) Requirement already satisfied: python-dateutil>=2.1 in c:\users\wisna\anaconda3\envs\picasso378\lib\site-packages (from matplotlib==3.0.0) (2.8.1) Requirement already satisfied: six in c:\users\wisna\anaconda3\envs\picasso378\lib\site-packages (from cycler>=0.10->matplotlib==3.0.0) (1.15.0) Installing collected packages: matplotlib Attempting uninstall: matplotlib Found existing installation: matplotlib 3.3.2 Uninstalling matplotlib-3.3.2: Successfully uninstalled matplotlib-3.3.2 Successfully installed matplotlib-3.0.0

(picasso378) C:\Users\wisna\Documents\picasso>python -m picasso render Attribute Qt::AA_EnableHighDpiScaling must be set before QCoreApplication is created. Attribute Qt::AA_EnableHighDpiScaling must be set before QCoreApplication is created. Attribute Qt::AA_EnableHighDpiScaling must be set before QCoreApplication is created. [Errno 2] No such file or directory: 'D:/DNA-PAINT/20201016_Bima_Bayou_PEG10kg4C_2p5nM_2/Cropped_Bima_Bayou_PEG10kg4C_2p5nM_2_TIRF_300ms_30percent_15Kframes_locs_201017_134951_drift.txt'