NSException in libc++abi When Running `picasso localize`

inbasperu commented 3 weeks ago

Issue Report: NSWindow Exception When Running `picasso localize`

Python Version: 3.10
Operating System: macOS Sonoma 14.2.1
Device: M3 Pro
Installation Method: Installed from source

Description

When attempting to run the command picasso localize, I encountered an uncaught exception related to NSWindow initialization. The application terminates unexpectedly with the following error message:

QObject::setParent: Cannot set parent, new parent is in a different thread
*** Terminating app due to uncaught exception 'NSInternalInconsistencyException', reason: 'NSWindow should only be instantiated on the main thread!'
*** First throw call stack:
(
        0   CoreFoundation                      0x000000018261c570 __exceptionPreprocess + 176
        1   libobjc.A.dylib                     0x000000018210deb4 objc_exception_throw + 60
        2   CoreFoundation                      0x00000001826418bc _CFBundleGetValueForInfoKey + 0
        3   AppKit                              0x0000000185d93194 -[NSWindow _initContent:styleMask:backing:defer:contentView:] + 188
        4   AppKit                              0x0000000185eecb3c -[NSPanel _initContent:styleMask:backing:defer:contentView:] + 48
        5   AppKit                              0x0000000185d930cc -[NSWindow initWithContentRect:styleMask:backing:defer:] + 48
        6   AppKit                              0x0000000185eecaf0 -[NSPanel initWithContentRect:styleMask:backing:defer:] + 48
        7   AppKit                              0x0000000185feece0 -[NSWindow initWithContentRect:styleMask:backing:defer:screen:] + 24
        8   libqcocoa.dylib                     0x00000002ad3eaa70 qt_plugin_instance + 188964
        9   libqcocoa.dylib                     0x00000002ad3d687c qt_plugin_instance + 106544
        10  libqcocoa.dylib                     0x00000002ad3cffa4 qt_plugin_instance + 79704
        11  libqcocoa.dylib                     0x00000002ad3cfabc qt_plugin_instance + 78448
        12  QtGui                               0x0000000104290d04 _ZN14QWindowPrivate6createEby + 164
        13  QtWidgets                           0x0000000103ce0c44 _ZN14QWidgetPrivate6createEv + 1180
        14  QtWidgets                           0x0000000103cdf9ac _ZN7QWidget6createEybb + 320
        15  QtWidgets                           0x0000000103cf16a0 _ZN14QWidgetPrivate10setVisibleEb + 180
        16  QtWidgets                           0x0000000103e930f8 _ZN7QDialog10setVisibleEb + 272
        17  QtWidgets                           0x0000000103e928f4 _ZN7QDialog4execEv + 224
        18  QtWidgets                           0x0000000103ecee80 _ZN11QMessageBox11informationEP7QWidgetRK7QStringS4_6QFlagsINS_14StandardButtonEES6_ + 372
        19  QtWidgets.abi3.so                   0x0000000104fc9f68 _ZL25meth_QMessageBox_criticalP7_objectS0_S0_ + 216
        20  python3.10                          0x0000000100fa4158 cfunction_call + 60
        21  python3.10                          0x0000000101062fc4 _PyEval_EvalFrameDefault + 58924
        22  python3.10                          0x0000000100f47364 _PyFunction_Vectorcall + 548
        23  python3.10                          0x00000001010cc7c0 _PyObject_VectorcallTstate.5848 + 92
        24  python3.10                          0x00000001010cb4e8 _PyErr_PrintEx + 356
        25  QtCore.abi3.so                      0x0000000102c59af8 _Z15pyqt5_err_printv + 128
        26  sip.cpython-310-darwin.so           0x0000000101ab23ec sip_api_call_procedure_method + 164
        27  QtCore.abi3.so                      0x0000000102b3427c _ZN10sipQThread3runEv + 112
        28  QtCore                              0x00000001033ee2f4 _ZN7QThread11qt_metacallEN11QMetaObject4CallEiPPv + 1296
        29  libsystem_pthread.dylib             0x00000001824ca034 _pthread_start + 136
        30  libsystem_pthread.dylib             0x00000001824c4e3c thread_start + 8
)
libc++abi: terminating due to uncaught exception of type NSException
zsh: abort      picasso localize

Additionally, the following warning is displayed during shutdown:

/opt/homebrew/Caskroom/miniconda/base/envs/picasso/lib/python3.10/multiprocessing/resource_tracker.py:224: UserWarning: resource_tracker: There appear to be 5 leaked semaphore objects to clean up at shutdown
  warnings.warn('resource_tracker: There appear to be %d '

Steps to Reproduce

Install picasso from source on macOS Sonoma 14.2.1.
Run the command picasso localize.

Please let me know if any additional information or logs are required to diagnose this issue.

Thank you for your time and assistance.

rafalkowalewski1 commented 3 weeks ago

Hello,

Thank you for reporting the problem. What Picasso version do you use?

Bests, Rafal

inbasperu commented 2 weeks ago

Hello,

Thank you for reporting the problem. What Picasso version do you use?

Bests, Rafal

I built Picasso from source. Here is the version I am using: -e git+https://github.com/jungmannlab/picasso.git@35c3d8eb164c3e50083744d23cf5f361b9108c5e#egg=picassosr

rafalkowalewski1 commented 2 weeks ago

Can you please go to your picasso folder and find the file called version.py? The version number is reported there.

Bests, Rafal

inbasperu commented 2 weeks ago

Can you please go to your picasso folder and find the file called version.py? The version number is reported there.

Bests, Rafal

Version number is "0.6.9"

rafalkowalewski1 commented 2 days ago

Hi,

Sorry for being inactive for some time. Could you please check if other Picasso modules work? For example, render or design?

Many thanks, Rafal

jungmannlab / picasso