marco-luo928420 commented 2 years ago

Dear Mr.JUN,what a wonderful function of jjDotPlot,the plot is very amazing.Today,i wanna use your code to repeat the blog,but there is an error.i google it,but didn't find the answer. The following is the running log:

library(scRNAtoolVis) httest <- system.file("extdata", "htdata.RDS", package = "scRNAtoolVis") pbmc <- readRDS(httest)

add groups

pbmc$groups <- rep(c('stim','control'),each = 1319)

add celltype

pbmc$celltype <- Seurat::Idents(pbmc)

load markergene

data("top3pbmc.markers")

check

head(top3pbmc.markers,3)

A tibble: 3 x 7

Groups: cluster [1]

  p_val avg_log2FC pct.1 pct.2 p_val_adj cluster     gene 
  <dbl>      <dbl> <dbl> <dbl>     <dbl> <fct>       <chr>

1 1.74e-109 1.07 0.897 0.593 2.39e-105 Naive CD4 T LDHB 2 1.17e- 83 1.33 0.435 0.108 1.60e- 79 Naive CD4 T CCR7 3 3.28e- 49 1.05 0.333 0.103 4.50e- 45 Naive CD4 T LEF1 # jjDotPlot(object = pbmc, gene = top3pbmc.markers$gene) Error: 'PercentAbove' is not an exported object from 'namespace:Seurat'

At last,thanks for you write this function,I can't wait to give you the little star!!!

junjunlab commented 2 years ago

I just fixed this error, you can re-install scRNAtoolVis. Thanks for your problem.