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junjunlab / scRNAtoolVis

Useful functions to make your scRNA-seq plot more cool!
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Update averageHeatmap.R #47

Closed bio1122 closed 1 month ago

bio1122 commented 1 month ago

parameter “layer ” exists only after the Seurat 5 update. new optional parameters for row&column cluster trees

junjunlab commented 1 month ago

You can add the show_row_dend = TRUE,show_column_dend = TRUE directly in viscluster function. Thanks for your contribution.

bio1122 commented 1 month ago

Probably I can't do this because the ComplexHeatmap::rowAnnotation function also accepts ... (implicit arguments) , which can cause certain errors to be generated.

You can add the show_row_dend = TRUE,show_column_dend = TRUE directly in viscluster function. Thanks for your contribution.

junjunlab commented 1 month ago

I have added show_row/column_dend params, you can re-install and have a try.