junlabucsd / mm3

Version 3 of Python mother machine analysis code
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Docker support #107

Closed jtsauls closed 5 years ago

jtsauls commented 5 years ago

Merged in latest changes before pushing and tested main scripts on testset1 within Docker container.

Major addition here is the inclusion of files for a Docker image which can run mm3. It is an Ubuntu 16.04 install with Python 3.5.2 and TensorFlow 1.3.1, though we can change all that if we want. I have tested all the major scripts on OSX, including the two GUI interfaces (channel picking and image annotation). There is an installation guide for setting up Docker in docs/.

There are additional issues I dealt with or am closing because I could not reproduce them while doing this including Issue #19, #30 (both about movie making), #67 , and #72 which changes some of the .pkl files to .yaml files, though not all of them.