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junlabucsd / napari-mm3

Mother machine image analysis through napari
BSD 3-Clause "New" or "Revised" License
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Option to rotate input images for better alignment in compile #33

Open rthiermann opened 1 year ago

rthiermann commented 1 year ago

We usually align the channels to vertical when imaging. For datasets where the channels are askew, we should have the option to rotate them - either by automatically determining the rotation or via user input. Important for background subtraction and tracking.

rthiermann commented 1 year ago

e.g. via https://scikit-image.org/docs/stable/api/skimage.transform.html#skimage.transform.rotate