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junlabucsd / napari-mm3

Mother machine image analysis through napari
BSD 3-Clause "New" or "Revised" License
8 stars 4 forks source link

Is the data incomplete or not in the format expected by the program #40

Open zxl555666 opened 1 week ago

zxl555666 commented 1 week ago

When I run compile, there is no display of the run option, only "set new directories" and "load last run settings" are shown, and in conda, there is such code: Failed to find a key piece of info: planes found: False fovs found: True times found: True Limited traceback: File "c:\users\xxxxx\napari-mm3\src\napari_mm3_deriving_widgets.py", line 358, in _load_from_data_conditional traceback.print_stack(limit=1). What could be the reason for this, and how should I handle it? Thank you!

zxl555666 commented 1 week ago

![Uploading 图片1.png…]()

rthiermann commented 6 days ago

Hi, can you share some more info about how your input data is formatted and named? (e.g. tiff files xy{fov number}_t{time step}.tif, etc. or something else?)

zxl555666 commented 6 days ago

Demonstration20241116.zip @RyanThiermann

Hello!

I have uploaded the video of the operation process to GitHub. You can view it through the following link:

https://github.com/zxl555666/Video-site

I hope this will help you better understand the issues I'm encountering. Thank you very much for your assistance and support!

Best regards,

Lei Zhuang

ShanghaiTech University

rthiermann commented 2 days ago

Thank you, that's helpful -- can you also share a sample of your data? for instance, a few of the tiffs output in the first step.

zxl555666 commented 1 day ago

TIFF-1.zip TIFF-2.zip TIFF-3.zip

@RyanThiermann

Thank you for your patience and guidance. Due to the attachment size limitations on the forum, I have split the TIFF output data into three zip packages. You can find and download them from the attachments below:

  1. [TIFF-1.zip]
  2. [TIFF-2.zip]
  3. [TIFF-3.zip]

Please unzip and review the contents of these packages. I hope these files will provide the necessary insights into the issue at hand. If you need any further information or additional data, please let me know.

Thank you again for your assistance.

Best regards,

Lei Zhuang
ShanghaiTech University