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jupyter-book / mystmd

Command line tools for working with MyST Markdown.
https://mystmd.org/guide
MIT License
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Trouble locating supposed latex errors #158

Closed drscotthawley closed 1 year ago

drscotthawley commented 1 year ago

Describe the bug

context When I do myst build --pdf

expectation I expected to get my pdf.

bug Instead I get error messages from MyST but can find no corresponding errors in the log file

Here's an error message I ran into...

Error while invoking latex - logs available at: _build/temp/mystyC3WIo
Error: Command failed: latexmk -f -xelatex -synctex=1 -interaction=batchmode -file-line-error -latexoption="-shell-escape" my-document.tex &> my-document.shell.log

problem This is a problem for peopl who go and inspect the log file _build/temp/mystyC3WIo/my-document.log in hopes of seeing what the error was, who then see NO errors in the log file, will be unable to debug what MyST is complaining about. Thus they will not be able to resolve the problem.

Reproduce the bug

  1. run myst build --pdf.
  2. See the error message.
  3. Load the log file into VSCode.
  4. Slowly scroll through the entire log file line by line looking for the error
  5. find no errors that way
  6. Ctrl-F on the word "error", find it only used in two places which are not in the context of error reporting.

Here is the log file:

This is XeTeX, Version 3.141592653-2.6-0.999994 (TeX Live 2022) (preloaded format=xelatex 2023.1.25)  25 JAN 2023 21:12
entering extended mode
 \write18 enabled.
 file:line:error style messages enabled.
 %&-line parsing enabled.
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[1

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LaTeX Font Info:    Trying to load font information for T1+cmtt on input line 1
32.
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File: t1cmtt.fd 2019/12/16 v2.5j Standard LaTeX font definitions
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Underfull \vbox (badness 10000) has occurred while \output is active []

(./my-document.bbl
Underfull \hbox (badness 6575) in paragraph at lines 53--57
[]\T1/txr/m/n/10 Prafulla Dhari-wal, Hee-woo Jun, Chris-tine Payne,
 []

Package fancyhdr Warning: \headheight is too small (10.84006pt): 
(fancyhdr)                Make it at least 12.0pt, for example:
(fancyhdr)                \setlength{\headheight}{12.0pt}.
(fancyhdr)                You might also make \topmargin smaller to compensate:

(fancyhdr)                \addtolength{\topmargin}{-1.15994pt}.

Package fancyhdr Warning: \footskip is too small (0.0pt): 
(fancyhdr)                Make it at least 3.60004pt, for example:
(fancyhdr)                \setlength{\footskip}{3.60004pt}.

[2])

Package fancyhdr Warning: \headheight is too small (10.84006pt): 
(fancyhdr)                Make it at least 12.0pt, for example:
(fancyhdr)                \setlength{\headheight}{12.0pt}.
(fancyhdr)                You might also make \topmargin smaller to compensate:

(fancyhdr)                \addtolength{\topmargin}{-1.15994pt}.

Package fancyhdr Warning: \footskip is too small (0.0pt): 
(fancyhdr)                Make it at least 3.60004pt, for example:
(fancyhdr)                \setlength{\footskip}{3.60004pt}.

[3

] (./my-document.aux)
Package rerunfilecheck Info: File `my-document.out' has not changed.
(rerunfilecheck)             Checksum: D41D8CD98F00B204E9800998ECF8427E;0.
 ) 
Here is how much of TeX's memory you used:
 23282 strings out of 476179
 432884 string characters out of 5809544
 706672 words of memory out of 5000000
 43599 multiletter control sequences out of 15000+600000
 516833 words of font info for 76 fonts, out of 8000000 for 9000
 1348 hyphenation exceptions out of 8191
 130i,14n,132p,824b,1200s stack positions out of 10000i,1000n,20000p,200000b,200000s

Output written on my-document.xdv (3 pages, 34660 bytes).

List your environment

$ jupyter-book --version
Jupyter Book      : 0.13.1
External ToC      : 0.2.4
MyST-Parser       : 0.15.2
MyST-NB           : 0.13.2
Sphinx Book Theme : 0.3.3
Jupyter-Cache     : 0.4.3
NbClient          : 0.5.13
drscotthawley commented 1 year ago

UPDATE: Seems that that supposed error message that MyST detects from latexmk is either a false flag (ie latexmk command did NOT fail) or else...IDK.
But in any case, the error can be ignored. The new PDF file has been created and looks fine.

rowanc1 commented 1 year ago

I think that tasks to do from this are better show the error messages that latex knows about if there is a failure, and have some better language around the errors saying that "everything might actually just be fine". LaTeX likes to complain about a lot, and we are only adapting to their error code status of the program is non-zero.

We could also show the shell log output, which will be a bit better than what is posted here!

I think we can also react to a few of the things in the logs for common errors and actually suggest some things to try. For example, I just went through and found this biber issue, which is "error code 2", having a friendly myst UI on top (1) shows errors; and (2) that actually suggests an action to take would be ideal.

rowanc1 commented 1 year ago

Also -- if this happens again to you @drscotthawley, looking at the my-document.shell.log is usually a bit better! We will make that clearer on the myst side!

rowanc1 commented 1 year ago

The error messages and confusion of where to look should now be improved:

image

LaTeX is really really bad at error messages and logs. Hopefully this helps bypass the actions that you listed in the problem (open the logs, scroll, find and deduplicate the errors and warnings, maybe nothing is wrong anyways).

rowanc1 commented 1 year ago

This has been released as myst-cli@0.1.9! 🚀

Thanks again for your help, please open other issues as you find them.