The DOI matching is quite aggressive, though; if a valid DOI can be pulled out of anywhere in the link, it will become a cite node. For example, I want to reference supplementary material like so: see supplementary material at [this website](https://www.frontiersin.org/articles/10.3389/fonc.2018.00134/full#supplementary-material) - I do not want this to become a citation. However, since the DOI is found in the middle of that link, it does become a citation (and then clicking on the link takes you to whatever page doi.org redirects to, possibly a different website, certainly without the #supplementary-material fragment appended).
We could address this by allowing users to specify they do not want a specific link converted to citation. However, this requires new syntax and extra, unexpected work for users.
I think a better solution would just be to scale back the DOI resolver that looks for a valid DOI anywhere in the link: https://github.com/curvenote/doi-utils/blob/main/src/resolvers.ts#L54-L61 - maybe remove that pathParts resolver entirely? Or maybe just add a few more rules, like there must be no fragment and maybe the DOI must be at the end of the path or something...?
When resolving
linknodes, MyST checks to see if they are DOIs and, if so, converts them intocitenodes: https://github.com/jupyter-book/mystmd/blob/main/packages/myst-cli/src/transforms/dois.ts#L235-L239 This enables nice shorthand for defining citations like links:[](https://doi.org/10.0000/abc123)The DOI matching is quite aggressive, though; if a valid DOI can be pulled out of anywhere in the
link, it will become acitenode. For example, I want to reference supplementary material like so:see supplementary material at [this website](https://www.frontiersin.org/articles/10.3389/fonc.2018.00134/full#supplementary-material)- I do not want this to become a citation. However, since the DOI is found in the middle of that link, it does become a citation (and then clicking on the link takes you to whatever pagedoi.orgredirects to, possibly a different website, certainly without the#supplementary-materialfragment appended).We could address this by allowing users to specify they do not want a specific link converted to citation. However, this requires new syntax and extra, unexpected work for users.
I think a better solution would just be to scale back the DOI resolver that looks for a valid DOI anywhere in the link: https://github.com/curvenote/doi-utils/blob/main/src/resolvers.ts#L54-L61 - maybe remove that
pathPartsresolver entirely? Or maybe just add a few more rules, like there must be no fragment and maybe the DOI must be at the end of the path or something...?