Closed schmittst closed 3 years ago
krassowski
commented
4 years ago Thanks for reporting it. I will check on the weekend, but I guess it might be a compatibility issue for the newer version. It works great for me with 0.3.4 (packageVersion('languageserver')); if you need it ASAP you could try downgrading the server (or maybe the kernel?).
schmittst
commented
4 years ago I quickly tried to downgrade the languageserver package to 0.3.4 like you suggested - did not help. So I guess I would need to downgrade the kernel. Not that urgent - I will wait until it is compatible! Thanks for the great work you have done with jupyterlab-lsp!
kwon14
commented
4 years ago If you use dockerfile, try this.. you should install JupyterLab 2.1.2 that following this script. make sure follow the steps below.
RUN pip install jupyter-lsp && \ conda install -c conda-forge nodejs && \ jupyter labextension install @krassowski/jupyterlab-lsp --no-build && \ conda install -c conda-forge python-language-server
schmittst
commented
4 years ago Thanks. I am using the jupyter/datascience-notebook (3b1f4f5) docker image. And I already used those commands in the dockerfile to setup the lsp (w/o the --no-build flag) However, I realized that this is running on JupyterLab 2.1.3 So it might be just incompatibility with 2.1.3?
krassowski
commented
4 years ago Unlikely - it works for me with:
but then, I do not use docker...
Does the R language server return any suspicious messages if run from an R console with languageserver::run(debug = TRUE)?
krassowski
commented
4 years ago @schmittst we had a major release recently aimed at JupyterLab 2.2. Would you like to try it out and check if this is still an issue for you?
krassowski
commented
3 years ago I will close it for now as it seems to be working fine with R for other users (and myself), but please feel welcome to re-open or create a new issue if you need any assistance.
Description
I have an issue with jupyterlab-lsp. I am new to JupyterLab and use it within a Docker (jupyter/datascience-notebook:latest) and within a Galaxy installation (but I have the same issue without Galaxy). I installed jupyterlab-lsp as described in the manual (incl. R and Python LSP) and the language server for Python (pyls) initializes correctly and and jupyterlab-lsp works as expected. However, when I switch to the R kernel the jupyterlab-lsp stops as "connecting..." for a while and then just says "connected" for the r-languageserver (instead of "initialized" as it does for pyls). As one would expect, jupyterlab-lsp then does not work for the R notebook (i.e. does not display any suggestions).
Reproduce
Expected behavior
For 4. and 5. from above I would expect the language server switching to "initialized" for both notebooks. This works for 4. (and e.g. autocomplete works) but not for 5. (here jupyterlab-lsp only shows "connected"). Expecially the output of the Browser JS concsole (see below) i find strange. Hee I get an "TypeError: can't convert undefined to object manager.js:" when opeing an R notebook. When opening an Python Notebook this does not happen.
Any ideas on how to solve this?
Context
Required: installed server extensions
config dir: /opt/conda/etc/jupyter ipyparallel.nbextension enabled - Validating... ipyparallel.nbextension OK jupyter_lsp enabled - Validating... jupyter_lsp 0.8.0 OK jupyterlab enabled - Validating...Required: installed lab extensions
JupyterLab v2.1.1 Known labextensions: app dir: /opt/conda/share/jupyter/lab @bokeh/jupyter_bokeh v2.0.1 enabled OK @jupyter-widgets/jupyterlab-manager v2.0.0 enabled OK @krassowski/jupyterlab-lsp v1.0.0 enabled OK jupyter-matplotlib v0.7.2 enabled OKTroubleshoot Output
$PATH: /home/jovyan/.local/bin /home/jovyan/.local/bin /opt/conda/bin /usr/local/sbin /usr/local/bin /usr/sbin /usr/bin /sbin /bin sys.path: /opt/conda/bin /opt/conda/lib/python37.zip /opt/conda/lib/python3.7 /opt/conda/lib/python3.7/lib-dynload /home/jovyan/.local/lib/python3.7/site-packages /opt/conda/lib/python3.7/site-packages sys.executable: /opt/conda/bin/python sys.version: 3.7.7 (default, Mar 26 2020, 15:48:22) [GCC 7.3.0] platform.platform(): Linux-4.18.0-147.8.1.el8_1.x86_64-x86_64-with-debian-buster-sid which -a jupyter: /opt/conda/bin/jupyter pip list: Package Version ---------------------- ---------------------------- absl-py 0.9.0 alembic 1.4.2 ansible 2.9.7 ansible-kernel 0.9.0 ansible-runner 1.4.6 appdirs 1.4.3 astor 0.8.0 astroid 2.3.3 async-generator 1.10 attrs 19.3.0 autopep8 1.5.2 backcall 0.1.0 bash-kernel 0.7.2 bcrypt 3.1.7 beautifulsoup4 4.9.0 bioblend 0.13.0 biopython 1.76 bleach 3.1.4 blinker 1.4 bokeh 2.0.2 boto 2.49.0 Bottleneck 1.3.2 brotlipy 0.7.0 cachetools 3.1.1 certifi 2020.4.5.1 certipy 0.1.3 cffi 1.14.0 chardet 3.0.4 click 7.1.2 cloudpickle 1.4.1 conda 4.8.3 conda-package-handling 1.6.0 cryptography 2.9.2 cycler 0.10.0 Cython 0.29.17 cytoolz 0.10.1 dask 2.15.0 decorator 4.4.2 defusedxml 0.6.0 dill 0.3.1.1 distributed 2.15.2 docopt 0.6.2 docutils 0.16 dogpile.cache 0.9.1 entrypoints 0.3 fastcache 1.1.0 findspark 1.3.0 flake8 3.7.9 fsspec 0.7.3 future 0.18.2 galaxy-ie-helpers 0.2.5 gast 0.2.2 gmpy2 2.1.0b1 google-auth 1.14.1 google-auth-oauthlib 0.4.1 google-pasta 0.2.0 grpcio 1.27.2 h5py 2.10.0 HeapDict 1.0.1 httplib2 0.17.3 idna 2.9 imageio 2.8.0 importlib-metadata 1.6.0 ipykernel 5.2.1 ipympl 0.5.6 ipyparallel 6.2.5 ipython 7.14.0 ipython-genutils 0.2.0 ipywidgets 7.5.1 iso8601 0.1.12 isort 4.3.21 jedi 0.15.2 Jinja2 2.11.2 jmespath 0.9.5 joblib 0.14.1 json5 0.9.4 jsonpatch 1.24 jsonpointer 2.0 jsonschema 3.2.0 jupyter-bokeh 2.0.1 jupyter-client 6.1.3 jupyter-core 4.6.3 jupyter-lsp 0.8.0 jupyter-telemetry 0.0.5 jupyterhub 1.1.0 jupyterlab 2.1.1 jupyterlab-server 1.1.1 Keras-Applications 1.0.8 Keras-Preprocessing 1.1.0 keystoneauth1 4.0.0 kiwisolver 1.2.0 lazy-object-proxy 1.4.3 llvmlite 0.32.0 locket 0.2.0 lockfile 0.12.2 Mako 1.1.2 Markdown 3.2.1 MarkupSafe 1.1.1 matplotlib 3.2.1 mccabe 0.6.1 metakernel 0.24.4 mistune 0.8.4 mock 4.0.2 mpmath 1.1.0 msgpack 1.0.0 munch 2.5.0 nbconvert 5.6.1 nbformat 5.0.6 netifaces 0.10.9 networkx 2.4 notebook 6.0.3 numba 0.49.0 numexpr 2.7.1 numpy 1.18.1 oauthlib 3.1.0 octave-kernel 0.31.1 olefile 0.46 openstacksdk 0.46.0 opt-einsum 0+untagged.56.g2664021.dirty os-service-types 1.7.0 packaging 20.3 pamela 1.0.0 pandas 1.0.3 pandocfilters 1.4.2 paramiko 2.7.1 parso 0.7.0 partd 1.1.0 patsy 0.5.1 pbr 5.4.4 pexpect 4.8.0 pickleshare 0.7.5 Pillow 7.1.2 pip 20.1 pluggy 0.13.1 portalocker 1.7.0 prometheus-client 0.7.1 prompt-toolkit 3.0.5 protobuf 3.11.4 psutil 5.7.0 ptyprocess 0.6.0 pyasn1 0.4.8 pyasn1-modules 0.2.7 pycodestyle 2.5.0 pycosat 0.6.3 pycparser 2.20 pycrypto 2.6.1 pycurl 7.43.0.5 pydocstyle 5.0.2 pyflakes 2.1.1 Pygments 2.6.1 PyJWT 1.7.1 pylint 2.5.0 PyNaCl 1.3.0 pyOpenSSL 19.1.0 pyparsing 2.4.7 pyrsistent 0.16.0 PySocks 1.7.1 python-daemon 2.2.4 python-dateutil 2.8.1 python-editor 1.0.4 python-json-logger 0.1.11 python-jsonrpc-server 0.3.4 python-language-server 0.31.10 pytz 2020.1 PyWavelets 1.1.1 PyYAML 5.3.1 pyzmq 19.0.0 requests 2.23.0 requests-oauthlib 1.3.0 requests-toolbelt 0.9.1 requestsexceptions 1.4.0 rope 0.16.0 rpy2 3.1.0 rsa 4.0 ruamel-yaml 0.15.80 ruamel.yaml 0.16.10 ruamel.yaml.clib 0.2.0 scikit-image 0.16.2 scikit-learn 0.22.2.post1 scipy 1.4.1 seaborn 0.10.1 Send2Trash 1.5.0 setuptools 46.1.3.post20200325 simplegeneric 0.8.1 six 1.14.0 snowballstemmer 2.0.0 sortedcontainers 2.1.0 soupsieve 2.0 spylon 0.3.0 spylon-kernel 0.4.1 SQLAlchemy 1.3.16 statsmodels 0.11.1 stevedore 1.30.1 sympy 1.5.1 tables 3.6.1 tblib 1.6.0 tensorboard 2.1.1 tensorflow 2.1.0 tensorflow-estimator 2.1.0 termcolor 1.1.0 terminado 0.8.3 testpath 0.4.4 toolz 0.10.0 tornado 6.0.4 tqdm 4.45.0 traitlets 4.3.3 typed-ast 1.4.1 typing-extensions 3.7.4.1 tzlocal 2.0.0 ujson 1.35 urllib3 1.25.9 vincent 0.4.4 wcwidth 0.1.9 webencodings 0.5.1 Werkzeug 1.0.1 wheel 0.34.2 widgetsnbextension 3.5.1 wrapt 1.12.1 xlrd 1.2.0 yapf 0.29.0 zict 2.0.0 zipp 3.1.0 conda list: # packages in environment at /opt/conda: # # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 1_llvm conda-forge _r-mutex 1.0.1 anacondar_1 conda-forge _tflow_select 2.3.0 mkl defaults absl-py 0.9.0 py37hc8dfbb8_1 conda-forge alembic 1.4.2 pyh9f0ad1d_0 conda-forge ansible 2.9.7 py37hc8dfbb8_0 conda-forge ansible-kernel 0.9.0 py37_0 conda-forge ansible-runner 1.4.6 pyh9f0ad1d_0 conda-forge appdirs 1.4.3 py_1 conda-forge astor 0.8.0 py37_0 defaults astroid 2.3.3 py37_1 conda-forge async_generator 1.10 py_0 conda-forge attrs 19.3.0 py_0 conda-forge autopep8 1.5.2 pyh9f0ad1d_0 conda-forge backcall 0.1.0 py_0 conda-forge bash_kernel 0.7.2 py_0 conda-forge bcrypt 3.1.7 py37h8f50634_1 conda-forge beautifulsoup4 4.9.0 py37hc8dfbb8_0 conda-forge binutils_impl_linux-64 2.34 h53a641e_0 conda-forge binutils_linux-64 2.34 hc952b39_18 conda-forge bioblend 0.13.0 pypi_0 pypi biopython 1.76 py37h516909a_0 conda-forge blas 2.16 openblas conda-forge bleach 3.1.4 pyh9f0ad1d_0 conda-forge blinker 1.4 py_1 conda-forge blosc 1.18.1 he1b5a44_0 conda-forge bokeh 2.0.2 py37_0 defaults boto 2.49.0 py_0 conda-forge bottleneck 1.3.2 py37h03ebfcd_1 conda-forge brotlipy 0.7.0 py37h8f50634_1000 conda-forge bwidget 1.9.14 0 conda-forge bzip2 1.0.8 h516909a_2 conda-forge c-ares 1.15.0 h516909a_1001 conda-forge ca-certificates 2020.4.5.1 hecc5488_0 conda-forge cachetools 3.1.1 py_0 conda-forge cairo 1.16.0 hcf35c78_1003 conda-forge certifi 2020.4.5.1 py37hc8dfbb8_0 conda-forge certipy 0.1.3 py_0 conda-forge cffi 1.14.0 py37hd463f26_0 conda-forge chardet 3.0.4 py37hc8dfbb8_1006 conda-forge click 7.1.2 pyh9f0ad1d_0 conda-forge cloudpickle 1.4.1 py_0 conda-forge conda 4.8.3 py37hc8dfbb8_1 conda-forge conda-package-handling 1.6.0 py37h8f50634_2 conda-forge configurable-http-proxy 4.2.1 node13_he01fd0c_0 conda-forge cryptography 2.9.2 py37hb09aad4_0 conda-forge curl 7.69.1 h33f0ec9_0 conda-forge cycler 0.10.0 py_2 conda-forge cython 0.29.17 py37h3340039_0 conda-forge cytoolz 0.10.1 py37h516909a_0 conda-forge dask 2.15.0 py_0 conda-forge dask-core 2.15.0 py_0 conda-forge decorator 4.4.2 py_0 conda-forge defusedxml 0.6.0 py_0 conda-forge dill 0.3.1.1 py37hc8dfbb8_1 conda-forge distributed 2.15.2 py37hc8dfbb8_0 conda-forge docopt 0.6.2 py_1 conda-forge docutils 0.16 py37hc8dfbb8_1 conda-forge dogpile.cache 0.9.1 pyh9f0ad1d_0 conda-forge entrypoints 0.3 py37hc8dfbb8_1001 conda-forge fastcache 1.1.0 py37h8f50634_1 conda-forge findspark 1.3.0 py_1 conda-forge flake8 3.7.9 py37hc8dfbb8_1 conda-forge fontconfig 2.13.1 h86ecdb6_1001 conda-forge freetype 2.10.1 he06d7ca_0 conda-forge fribidi 1.0.9 h516909a_0 conda-forge fsspec 0.7.3 py_0 conda-forge future 0.18.2 py37hc8dfbb8_1 conda-forge galaxy-ie-helpers 0.2.5 pypi_0 pypi gast 0.2.2 py_0 conda-forge gcc_impl_linux-64 7.3.0 hd420e75_5 conda-forge gcc_linux-64 7.3.0 h553295d_18 conda-forge gettext 0.19.8.1 hc5be6a0_1002 conda-forge gfortran_impl_linux-64 7.3.0 hdf63c60_5 conda-forge gfortran_linux-64 7.3.0 h553295d_18 conda-forge glib 2.64.2 h6f030ca_0 conda-forge gmp 6.2.0 he1b5a44_2 conda-forge gmpy2 2.1.0b1 py37h04dde30_0 conda-forge google-auth 1.14.1 pyh9f0ad1d_0 conda-forge google-auth-oauthlib 0.4.1 py_2 conda-forge google-pasta 0.2.0 pyh8c360ce_0 conda-forge graphite2 1.3.13 he1b5a44_1001 conda-forge grpcio 1.27.2 py37hf8bcb03_0 defaults gsl 2.6 h294904e_0 conda-forge gxx_impl_linux-64 7.3.0 hdf63c60_5 conda-forge gxx_linux-64 7.3.0 h553295d_18 conda-forge h5py 2.10.0 nompi_py37h513d04c_102 conda-forge harfbuzz 2.4.0 h9f30f68_3 conda-forge hdf5 1.10.5 nompi_h3c11f04_1104 conda-forge heapdict 1.0.1 py_0 conda-forge httplib2 0.17.3 pyh9f0ad1d_0 conda-forge icu 64.2 he1b5a44_1 conda-forge idna 2.9 py_1 conda-forge imageio 2.8.0 py_0 conda-forge importlib-metadata 1.6.0 py37hc8dfbb8_0 conda-forge importlib_metadata 1.6.0 0 conda-forge ipykernel 5.2.1 py37h43977f1_0 conda-forge ipympl 0.5.6 pyh9f0ad1d_1 conda-forge ipyparallel 6.2.5 py37hc8dfbb8_0 conda-forge ipython 7.14.0 py37hc8dfbb8_0 conda-forge ipython_genutils 0.2.0 py_1 conda-forge ipywidgets 7.5.1 py_0 conda-forge iso8601 0.1.12 py_1 conda-forge isort 4.3.21 py37hc8dfbb8_1 conda-forge jedi 0.15.2 py37_0 conda-forge jinja2 2.11.2 pyh9f0ad1d_0 conda-forge jmespath 0.9.5 py_0 conda-forge joblib 0.14.1 py_0 conda-forge jpeg 9c h14c3975_1001 conda-forge json5 0.9.4 py_0 defaults jsonpatch 1.24 py_0 conda-forge jsonpointer 2.0 py_0 conda-forge jsonschema 3.2.0 py37hc8dfbb8_1 conda-forge jupyter-lsp 0.8.0 pypi_0 pypi jupyter_bokeh 2.0.1 py_0 bokeh jupyter_client 6.1.3 py_0 conda-forge jupyter_core 4.6.3 py37hc8dfbb8_1 conda-forge jupyter_telemetry 0.0.5 py_0 conda-forge jupyterhub 1.1.0 py37_2 conda-forge jupyterhub-base 1.1.0 py37_2 conda-forge jupyterlab 2.1.1 py_0 conda-forge jupyterlab_server 1.1.1 py_0 conda-forge keras-applications 1.0.8 py_1 conda-forge keras-preprocessing 1.1.0 py_0 conda-forge keystoneauth1 4.0.0 py_0 conda-forge kiwisolver 1.2.0 py37h99015e2_0 conda-forge krb5 1.17.1 h2fd8d38_0 conda-forge lazy-object-proxy 1.4.3 py37h8f50634_2 conda-forge ld_impl_linux-64 2.34 h53a641e_0 conda-forge libblas 3.8.0 16_openblas conda-forge libcblas 3.8.0 16_openblas conda-forge libcurl 7.69.1 hf7181ac_0 conda-forge libedit 3.1.20181209 hc058e9b_0 defaults libffi 3.2.1 he1b5a44_1007 conda-forge libgcc-ng 9.2.0 h24d8f2e_2 conda-forge libgfortran-ng 7.3.0 hdf63c60_5 conda-forge libgomp 9.2.0 h24d8f2e_2 conda-forge libiconv 1.15 h516909a_1006 conda-forge liblapack 3.8.0 16_openblas conda-forge liblapacke 3.8.0 16_openblas conda-forge libllvm8 8.0.1 hc9558a2_0 conda-forge libopenblas 0.3.9 h5ec1e0e_0 conda-forge libpng 1.6.37 hed695b0_1 conda-forge libprotobuf 3.11.4 h8b12597_0 conda-forge libsodium 1.0.17 h516909a_0 conda-forge libssh2 1.8.2 h22169c7_2 conda-forge libstdcxx-ng 9.2.0 hdf63c60_2 conda-forge libtiff 4.1.0 hc7e4089_6 conda-forge libuuid 2.32.1 h14c3975_1000 conda-forge libuv 1.34.0 h516909a_0 conda-forge libwebp-base 1.1.0 h516909a_3 conda-forge libxcb 1.13 h14c3975_1002 conda-forge libxml2 2.9.10 hee79883_0 conda-forge llvm-openmp 10.0.0 hc9558a2_0 conda-forge llvmlite 0.32.0 py37h5202443_0 conda-forge locket 0.2.0 py_2 conda-forge lockfile 0.12.2 py_1 conda-forge lz4-c 1.9.2 he1b5a44_0 conda-forge lzo 2.10 h14c3975_1000 conda-forge make 4.3 h516909a_0 conda-forge mako 1.1.2 py_0 defaults markdown 3.2.1 py_0 conda-forge markupsafe 1.1.1 py37h8f50634_1 conda-forge matplotlib-base 3.2.1 py37h30547a4_0 conda-forge mccabe 0.6.1 py_1 conda-forge metakernel 0.24.4 pyh9f0ad1d_0 conda-forge mistune 0.8.4 py37h8f50634_1001 conda-forge mock 4.0.2 py_0 defaults mpc 1.1.0 h04dde30_1007 conda-forge mpfr 4.0.2 he80fd80_1 conda-forge mpmath 1.1.0 py_0 conda-forge msgpack-python 1.0.0 py37h99015e2_1 conda-forge munch 2.5.0 py_0 conda-forge nbconvert 5.6.1 py37hc8dfbb8_1 conda-forge nbformat 5.0.6 py_0 conda-forge ncurses 6.2 he6710b0_1 defaults netifaces 0.10.9 py37h8f50634_1002 conda-forge networkx 2.4 py_1 conda-forge nodejs 13.13.0 hf5d1a2b_0 conda-forge notebook 6.0.3 py37_0 conda-forge numba 0.49.0 py37h0573a6f_0 defaults numexpr 2.7.1 py37h0da4684_1 conda-forge numpy 1.18.1 py37h8960a57_1 conda-forge oauthlib 3.1.0 py_0 defaults octave_kernel 0.31.1 pyh9f0ad1d_0 conda-forge olefile 0.46 py_0 conda-forge openjdk 8.0.152 h7b6447c_3 defaults openssl 1.1.1g h516909a_0 conda-forge openstacksdk 0.46.0 py_0 conda-forge opt_einsum 3.2.1 py_0 conda-forge os-service-types 1.7.0 pyh9f0ad1d_0 conda-forge packaging 20.3 py_0 defaults pamela 1.0.0 py_0 conda-forge pandas 1.0.3 py37h0da4684_1 conda-forge pandoc 2.9.2.1 0 conda-forge pandocfilters 1.4.2 py_1 conda-forge pango 1.42.4 h7062337_4 conda-forge paramiko 2.7.1 py37_0 conda-forge parso 0.7.0 pyh9f0ad1d_0 conda-forge partd 1.1.0 py_0 conda-forge patsy 0.5.1 py_0 conda-forge pbr 5.4.4 py_0 defaults pcre 8.44 he1b5a44_0 conda-forge pexpect 4.8.0 py37hc8dfbb8_1 conda-forge pickleshare 0.7.5 py37hc8dfbb8_1001 conda-forge pillow 7.1.2 py37h718be6c_0 conda-forge pip 20.1 pyh9f0ad1d_0 conda-forge pixman 0.38.0 h516909a_1003 conda-forge pluggy 0.13.1 py37_0 defaults portalocker 1.7.0 py37hc8dfbb8_0 conda-forge prometheus_client 0.7.1 py_0 conda-forge prompt-toolkit 3.0.5 py_0 conda-forge protobuf 3.11.4 py37h3340039_1 conda-forge psutil 5.7.0 py37h8f50634_1 conda-forge pthread-stubs 0.4 h14c3975_1001 conda-forge ptyprocess 0.6.0 py_1001 conda-forge pyasn1 0.4.8 py_0 conda-forge pyasn1-modules 0.2.7 py_0 conda-forge pycodestyle 2.5.0 py_0 conda-forge pycosat 0.6.3 py37h8f50634_1004 conda-forge pycparser 2.20 py_0 conda-forge pycrypto 2.6.1 py37h8f50634_1004 conda-forge pycurl 7.43.0.5 py37h16ce93b_0 conda-forge pydocstyle 5.0.2 py_0 conda-forge pyflakes 2.1.1 py37_0 defaults pygments 2.6.1 py_0 conda-forge pyjwt 1.7.1 py_0 conda-forge pylint 2.5.0 py37_0 defaults pynacl 1.3.0 py37h516909a_1001 conda-forge pyopenssl 19.1.0 py_1 conda-forge pyparsing 2.4.7 pyh9f0ad1d_0 conda-forge pyrsistent 0.16.0 py37h8f50634_0 conda-forge pysocks 1.7.1 py37hc8dfbb8_1 conda-forge pytables 3.6.1 py37h9f153d1_1 conda-forge python 3.7.7 hcf32534_0_cpython defaults python-daemon 2.2.4 py37_1 conda-forge python-dateutil 2.8.1 py_0 conda-forge python-editor 1.0.4 py_0 conda-forge python-json-logger 0.1.11 py_0 conda-forge python-jsonrpc-server 0.3.4 py_0 conda-forge python-language-server 0.31.10 py37hc8dfbb8_0 conda-forge python_abi 3.7 1_cp37m conda-forge pytz 2020.1 pyh9f0ad1d_0 conda-forge pywavelets 1.1.1 py37h03ebfcd_1 conda-forge pyyaml 5.3.1 py37h8f50634_0 conda-forge pyzmq 19.0.0 py37hac76be4_1 conda-forge r-askpass 1.1 r36hcdcec82_2 conda-forge r-assertthat 0.2.1 r36h6115d3f_1 conda-forge r-backports 1.1.6 r36hcdcec82_2 conda-forge r-base 3.6.3 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r-desc 1.2.0 r36h6115d3f_1002 conda-forge r-devtools 2.3.0 r36h6115d3f_0 conda-forge r-digest 0.6.25 r36h0357c0b_2 conda-forge r-dplyr 0.8.5 r36h0357c0b_0 conda-forge r-dt 0.13 r36h6115d3f_0 conda-forge r-ellipsis 0.3.0 r36hcdcec82_1 conda-forge r-evaluate 0.14 r36h6115d3f_1 conda-forge r-fansi 0.4.1 r36hcdcec82_1 conda-forge r-farver 2.0.3 r36h0357c0b_1 conda-forge r-fastmap 1.0.1 r36h0357c0b_1 conda-forge r-forcats 0.5.0 r36h6115d3f_0 conda-forge r-foreach 1.5.0 r36h6115d3f_0 conda-forge r-forecast 8.12 r36hc8faad4_0 conda-forge r-fracdiff 1.5_1 r36hc57f18f_0 conda-forge r-fs 1.4.1 r36h0357c0b_1 conda-forge r-generics 0.0.2 r36h6115d3f_1002 conda-forge r-ggplot2 3.3.0 r36h6115d3f_0 conda-forge r-gh 1.1.0 r36h6115d3f_0 conda-forge r-git2r 0.26.1 r36h7253d3a_2 conda-forge r-glue 1.4.0 r36hcdcec82_1 conda-forge r-gower 0.2.1 r36hcdcec82_1 conda-forge r-gtable 0.3.0 r36h6115d3f_2 conda-forge r-haven 2.2.0 r36hde08347_0 conda-forge r-hexbin 1.28.1 r36h9bbef5b_1 conda-forge r-highr 0.8 r36h6115d3f_1 conda-forge r-hms 0.5.3 r36h6115d3f_0 conda-forge r-htmltools 0.4.0 r36h0357c0b_0 conda-forge r-htmlwidgets 1.5.1 r36h6115d3f_0 conda-forge r-httpuv 1.5.2 r36h0357c0b_1 conda-forge r-httr 1.4.1 r36h6115d3f_1 conda-forge r-ini 0.3.1 r36h6115d3f_1002 conda-forge r-ipred 0.9_9 r36hcdcec82_1 conda-forge r-irdisplay 0.7 r36_1001 conda-forge r-irkernel 1.1 r36h6115d3f_0 conda-forge r-isoband 0.2.1 r36h0357c0b_0 conda-forge r-iterators 1.0.12 r36h6115d3f_0 conda-forge r-jsonlite 1.6.1 r36hcdcec82_1 conda-forge r-kernsmooth 2.23_17 r36hfa343cc_1 conda-forge r-knitr 1.28 r36h6115d3f_0 conda-forge r-labeling 0.3 r36h6115d3f_1002 conda-forge r-later 1.0.0 r36h0357c0b_0 conda-forge r-lattice 0.20_41 r36hcdcec82_2 conda-forge r-lava 1.6.7 r36h6115d3f_0 conda-forge r-lazyeval 0.2.2 r36hcdcec82_2 conda-forge r-lifecycle 0.2.0 r36h6115d3f_0 conda-forge r-lmtest 0.9_37 r36h9bbef5b_3 conda-forge r-lubridate 1.7.8 r36h0357c0b_0 conda-forge r-magrittr 1.5 r36h6115d3f_1002 conda-forge r-markdown 1.1 r36hcdcec82_0 conda-forge r-mass 7.3_51.6 r36hcdcec82_2 conda-forge r-matrix 1.2_18 r36h7fa42b6_3 conda-forge r-memoise 1.1.0 r36h6115d3f_1003 conda-forge r-mgcv 1.8_31 r36h7fa42b6_1 conda-forge r-mime 0.9 r36hcdcec82_1 conda-forge r-modelmetrics 1.2.2.2 r36h0357c0b_0 conda-forge r-modelr 0.1.7 r36h6115d3f_0 conda-forge r-munsell 0.5.0 r36h6115d3f_1002 conda-forge r-nlme 3.1_147 r36h9bbef5b_1 conda-forge r-nnet 7.3_14 r36hcdcec82_1 conda-forge r-numderiv 2016.8_1.1 r36h6115d3f_1 conda-forge r-nycflights13 1.0.1 r36h6115d3f_0 conda-forge r-openssl 1.4.1 r36he5c4762_1 conda-forge r-pbdzmq 0.3_3 r36h559a7a4_1002 conda-forge r-pillar 1.4.3 r36h6115d3f_0 conda-forge r-pkgbuild 1.0.7 r36h6115d3f_0 conda-forge r-pkgconfig 2.0.3 r36h6115d3f_0 conda-forge r-pkgload 1.0.2 r36h0357c0b_1001 conda-forge r-plogr 0.2.0 r36h6115d3f_1002 conda-forge r-plyr 1.8.6 r36h0357c0b_1 conda-forge r-praise 1.0.0 r36h6115d3f_1003 conda-forge r-prettyunits 1.1.1 r36h6115d3f_0 conda-forge r-proc 1.16.2 r36h0357c0b_0 conda-forge r-processx 3.4.2 r36hcdcec82_0 conda-forge r-prodlim 2019.11.13 r36h0357c0b_0 conda-forge r-progress 1.2.2 r36h6115d3f_1 conda-forge r-promises 1.1.0 r36h0357c0b_0 conda-forge r-ps 1.3.2 r36hcdcec82_1 conda-forge r-purrr 0.3.4 r36hcdcec82_0 conda-forge r-quadprog 1.5_8 r36hfa343cc_2 conda-forge r-quantmod 0.4.17 r36h6115d3f_0 conda-forge r-r6 2.4.1 r36h6115d3f_0 conda-forge r-randomforest 4.6_14 r36h9bbef5b_1002 conda-forge r-rcmdcheck 1.3.3 r36h6115d3f_2 conda-forge r-rcolorbrewer 1.1_2 r36h6115d3f_1002 conda-forge r-rcpp 1.0.4.6 r36h0357c0b_1 conda-forge r-rcpparmadillo 0.9.870.2.0 r36h51c796c_1 conda-forge r-rcurl 1.98_1.2 r36hcdcec82_0 conda-forge r-readr 1.3.1 r36h0357c0b_1002 conda-forge r-readxl 1.3.1 r36hde08347_3 conda-forge r-recipes 0.1.12 r36h6115d3f_0 conda-forge r-rematch 1.0.1 r36h6115d3f_1002 conda-forge r-rematch2 2.1.2 r36h6115d3f_0 conda-forge r-remotes 2.1.1 r36h6115d3f_0 conda-forge r-repr 1.1.0 r36h6115d3f_0 conda-forge r-reprex 0.3.0 r36h6115d3f_1 conda-forge r-reshape2 1.4.4 r36h0357c0b_0 conda-forge r-rex 1.2.0 r36h6115d3f_0 conda-forge r-rlang 0.4.5 r36hcdcec82_3 conda-forge r-rmarkdown 2.1 r36h6115d3f_0 conda-forge r-roxygen2 7.1.0 r36h0357c0b_0 conda-forge r-rpart 4.1_15 r36hcdcec82_2 conda-forge r-rprojroot 1.3_2 r36h6115d3f_1002 conda-forge r-rsqlite 2.2.0 r36h0357c0b_0 conda-forge r-rstudioapi 0.11 r36h6115d3f_0 conda-forge r-rversions 2.0.1 r36h6115d3f_0 conda-forge r-rvest 0.3.5 r36h6115d3f_0 conda-forge r-scales 1.1.0 r36h6115d3f_0 conda-forge r-selectr 0.4_2 r36h6115d3f_0 conda-forge r-sessioninfo 1.1.1 r36h6115d3f_1001 conda-forge r-shiny 1.4.0.2 r36h6115d3f_0 conda-forge r-sourcetools 0.1.7 r36he1b5a44_1002 conda-forge r-squarem 2020.2 r36h6115d3f_0 conda-forge r-stringi 1.4.6 r36h0e574ca_2 conda-forge r-stringr 1.4.0 r36h6115d3f_1 conda-forge r-survival 3.1_12 r36hcdcec82_1 conda-forge r-sys 3.3 r36hcdcec82_1 conda-forge r-testthat 2.3.2 r36h0357c0b_0 conda-forge r-tibble 3.0.1 r36hcdcec82_0 conda-forge r-tidyr 1.0.2 r36h0357c0b_0 conda-forge r-tidyselect 1.0.0 r36h6115d3f_0 conda-forge r-tidyverse 1.3.0 r36h6115d3f_1 conda-forge r-timedate 3043.102 r36h6115d3f_1001 conda-forge r-tinytex 0.22 r36h6115d3f_0 conda-forge r-tseries 0.10_47 r36hfa343cc_3 conda-forge r-ttr 0.23_6 r36hcdcec82_0 conda-forge r-urca 1.3_0 r36h9bbef5b_1004 conda-forge r-usethis 1.6.1 r36h6115d3f_0 conda-forge r-utf8 1.1.4 r36hcdcec82_1003 conda-forge r-uuid 0.1_4 r36hcdcec82_1 conda-forge r-vctrs 0.2.4 r36hcdcec82_0 conda-forge r-viridislite 0.3.0 r36h6115d3f_1002 conda-forge r-whisker 0.4 r36h6115d3f_0 conda-forge r-withr 2.2.0 r36h6115d3f_0 conda-forge r-xfun 0.13 r36h6115d3f_0 conda-forge r-xml 3.99_0.3 r36hcdcec82_1 conda-forge r-xml2 1.3.2 r36h0357c0b_1 conda-forge r-xopen 1.0.0 r36h6115d3f_1002 conda-forge r-xtable 1.8_4 r36h6115d3f_2 conda-forge r-xts 0.12_0 r36hcdcec82_1 conda-forge r-yaml 2.2.1 r36hcdcec82_1 conda-forge r-zeallot 0.1.0 r36h6115d3f_1001 conda-forge r-zoo 1.8_7 r36hcdcec82_1 conda-forge readline 8.0 h7b6447c_0 defaults requests 2.23.0 pyh8c360ce_2 conda-forge requests-oauthlib 1.3.0 py_0 defaults requests-toolbelt 0.9.1 pypi_0 pypi requestsexceptions 1.4.0 py_0 conda-forge rope 0.16.0 py_0 conda-forge rpy2 3.1.0 py37r36hc1659b7_3 conda-forge rsa 4.0 py_0 conda-forge ruamel.yaml 0.16.10 py37h7b6447c_1 defaults ruamel.yaml.clib 0.2.0 py37h8f50634_1 conda-forge ruamel_yaml 0.15.80 py37h8f50634_1001 conda-forge scijava-jupyter-kernel 0.6.1 0 conda-forge scikit-image 0.16.2 py37hb3f55d8_0 conda-forge scikit-learn 0.22.2.post1 py37hcdab131_0 conda-forge scipy 1.4.1 py37ha3d9a3c_3 conda-forge seaborn 0.10.1 py_0 conda-forge sed 4.7 h1bed415_1000 conda-forge send2trash 1.5.0 py_0 conda-forge setuptools 46.1.3 py37hc8dfbb8_0 conda-forge simplegeneric 0.8.1 py_1 conda-forge six 1.14.0 py_1 conda-forge snowballstemmer 2.0.0 py_0 conda-forge sortedcontainers 2.1.0 py_0 conda-forge soupsieve 2.0 py_0 defaults spylon 0.3.0 py_1 conda-forge spylon-kernel 0.4.1 py_1000 conda-forge sqlalchemy 1.3.16 py37h8f50634_0 conda-forge sqlite 3.31.1 h62c20be_1 defaults statsmodels 0.11.1 py37h8f50634_1 conda-forge stevedore 1.30.1 py_0 conda-forge sympy 1.5.1 py37hc8dfbb8_3 conda-forge tbb 2020.1 hc9558a2_0 conda-forge tblib 1.6.0 py_0 conda-forge tensorboard 2.1.1 py_1 conda-forge tensorflow 2.1.0 mkl_py37h80a91df_0 defaults tensorflow-base 2.1.0 mkl_py37h6d63fb7_0 defaults tensorflow-estimator 2.1.0 pyhd54b08b_0 defaults termcolor 1.1.0 py_2 conda-forge terminado 0.8.3 py37hc8dfbb8_1 conda-forge testpath 0.4.4 py_0 conda-forge tini 0.18.0 h14c3975_1001 conda-forge tk 8.6.10 hed695b0_0 conda-forge tktable 2.10 h555a92e_3 conda-forge toolz 0.10.0 py_0 conda-forge tornado 6.0.4 py37h8f50634_1 conda-forge tqdm 4.45.0 pyh9f0ad1d_1 conda-forge traitlets 4.3.3 py37hc8dfbb8_1 conda-forge typed-ast 1.4.1 py37h516909a_0 conda-forge typing_extensions 3.7.4.1 py37hc8dfbb8_3 conda-forge tzlocal 2.0.0 py_0 conda-forge ujson 1.35 py37h3340039_1002 conda-forge urllib3 1.25.9 py_0 conda-forge vincent 0.4.4 py_1 conda-forge wcwidth 0.1.9 pyh9f0ad1d_0 conda-forge webencodings 0.5.1 py_1 conda-forge werkzeug 1.0.1 pyh9f0ad1d_0 conda-forge wheel 0.34.2 py_1 conda-forge widgetsnbextension 3.5.1 py37_0 conda-forge wrapt 1.12.1 py37h8f50634_1 conda-forge xlrd 1.2.0 py_0 conda-forge xorg-kbproto 1.0.7 h14c3975_1002 conda-forge xorg-libice 1.0.10 h516909a_0 conda-forge xorg-libsm 1.2.3 h84519dc_1000 conda-forge xorg-libx11 1.6.9 h516909a_0 conda-forge xorg-libxau 1.0.9 h14c3975_0 conda-forge xorg-libxdmcp 1.1.3 h516909a_0 conda-forge xorg-libxext 1.3.4 h516909a_0 conda-forge xorg-libxrender 0.9.10 h516909a_1002 conda-forge xorg-renderproto 0.11.1 h14c3975_1002 conda-forge xorg-xextproto 7.3.0 h14c3975_1002 conda-forge xorg-xproto 7.0.31 h14c3975_1007 conda-forge xz 5.2.5 h516909a_0 conda-forge yaml 0.2.4 h516909a_0 conda-forge yapf 0.29.0 py_0 conda-forge zeromq 4.3.2 he1b5a44_2 conda-forge zict 2.0.0 py_0 conda-forge zipp 3.1.0 py_0 conda-forge zlib 1.2.11 h516909a_1006 conda-forge zstd 1.4.4 h6597ccf_3 conda-forgeCommand Line Output
[D 15:36:41.403 LabApp] Searching ['/import', '/home/jovyan/.jupyter', '/opt/conda/etc/jupyter', '/usr/local/etc/jupyter', '/etc/jupyter'] for config files [D 15:36:41.403 LabApp] Looking for jupyter_config in /etc/jupyter [D 15:36:41.404 LabApp] Looking for jupyter_config in /usr/local/etc/jupyter [D 15:36:41.404 LabApp] Looking for jupyter_config in /opt/conda/etc/jupyter [D 15:36:41.404 LabApp] Looking for jupyter_config in /home/jovyan/.jupyter [D 15:36:41.404 LabApp] Looking for jupyter_config in /import [D 15:36:41.405 LabApp] Looking for jupyter_notebook_config in /etc/jupyter [D 15:36:41.406 LabApp] Loaded config file: /etc/jupyter/jupyter_notebook_config.py [D 15:36:41.406 LabApp] Looking for jupyter_notebook_config in /usr/local/etc/jupyter [D 15:36:41.407 LabApp] Looking for jupyter_notebook_config in /opt/conda/etc/jupyter [D 15:36:41.407 LabApp] Looking for jupyter_notebook_config in /home/jovyan/.jupyter [D 15:36:41.407 LabApp] Loaded config file: /home/jovyan/.jupyter/jupyter_notebook_config.py [D 15:36:41.408 LabApp] Looking for jupyter_notebook_config in /import [D 15:36:41.417 LabApp] Paths used for configuration of jupyter_notebook_config: /etc/jupyter/jupyter_notebook_config.json [D 15:36:41.417 LabApp] Paths used for configuration of jupyter_notebook_config: /usr/local/etc/jupyter/jupyter_notebook_config.json [D 15:36:41.418 LabApp] Paths used for configuration of jupyter_notebook_config: /opt/conda/etc/jupyter/jupyter_notebook_config.d/ipyparallel-serverextension.json /opt/conda/etc/jupyter/jupyter_notebook_config.d/jupyter-lsp-serverextension.json /opt/conda/etc/jupyter/jupyter_notebook_config.d/jupyterlab.json /opt/conda/etc/jupyter/jupyter_notebook_config.json [D 15:36:41.420 LabApp] Paths used for configuration of jupyter_notebook_config: /home/jovyan/.jupyter/jupyter_notebook_config.json [W 15:36:41.707 LabApp] All authentication is disabled. Anyone who can connect to this server will be able to run code. [I 15:36:41.708 LabApp] The port 8888 is already in use, trying another port. [I 15:36:41.728 LabApp] Loading IPython parallel extension [D 15:36:41.789 LabApp] Checking for /import/node_modules/bash-language-server/bin/main.js [D 15:36:41.789 LabApp] Checking for /opt/conda/share/jupyter/lab/staging/node_modules/bash-language-server/bin/main.js [D 15:36:41.789 LabApp] Checking for /opt/conda/lib/node_modules/bash-language-server/bin/main.js [D 15:36:41.789 LabApp] Checking for /opt/conda/node_modules/bash-language-server/bin/main.js [D 15:36:41.789 LabApp] bash-language-server/bin/main.js not found in node_modules of [PosixPath('/import'), PosixPath('/opt/conda/share/jupyter/lab/staging'), PosixPath('/opt/conda/lib'), PosixPath('/opt/conda')] [D 15:36:41.790 LabApp] Checking for /import/node_modules/dockerfile-language-server-nodejs/lib/server.js [D 15:36:41.790 LabApp] Checking for /opt/conda/share/jupyter/lab/staging/node_modules/dockerfile-language-server-nodejs/lib/server.js [D 15:36:41.790 LabApp] Checking for /opt/conda/lib/node_modules/dockerfile-language-server-nodejs/lib/server.js [D 15:36:41.790 LabApp] Checking for /opt/conda/node_modules/dockerfile-language-server-nodejs/lib/server.js [D 15:36:41.790 LabApp] dockerfile-language-server-nodejs/lib/server.js not found in node_modules of [PosixPath('/import'), PosixPath('/opt/conda/share/jupyter/lab/staging'), PosixPath('/opt/conda/lib'), PosixPath('/opt/conda')] [D 15:36:41.790 LabApp] Checking for /import/node_modules/javascript-typescript-langserver/lib/language-server-stdio.js [D 15:36:41.791 LabApp] Checking for /opt/conda/share/jupyter/lab/staging/node_modules/javascript-typescript-langserver/lib/language-server-stdio.js [D 15:36:41.791 LabApp] Checking for /opt/conda/lib/node_modules/javascript-typescript-langserver/lib/language-server-stdio.js [D 15:36:41.791 LabApp] Checking for /opt/conda/node_modules/javascript-typescript-langserver/lib/language-server-stdio.js [D 15:36:41.791 LabApp] javascript-typescript-langserver/lib/language-server-stdio.js not found in node_modules of [PosixPath('/import'), PosixPath('/opt/conda/share/jupyter/lab/staging'), PosixPath('/opt/conda/lib'), PosixPath('/opt/conda')] [D 15:36:41.794 LabApp] Checking for /import/node_modules/unified-language-server/src/server.js [D 15:36:41.794 LabApp] Checking for /opt/conda/share/jupyter/lab/staging/node_modules/unified-language-server/src/server.js [D 15:36:41.795 LabApp] Checking for /opt/conda/lib/node_modules/unified-language-server/src/server.js [D 15:36:41.795 LabApp] Checking for /opt/conda/node_modules/unified-language-server/src/server.js [D 15:36:41.795 LabApp] unified-language-server/src/server.js not found in node_modules of [PosixPath('/import'), PosixPath('/opt/conda/share/jupyter/lab/staging'), PosixPath('/opt/conda/lib'), PosixPath('/opt/conda')] [D 15:36:41.795 LabApp] Checking for /import/node_modules/vscode-css-languageserver-bin/cssServerMain.js [D 15:36:41.795 LabApp] Checking for /opt/conda/share/jupyter/lab/staging/node_modules/vscode-css-languageserver-bin/cssServerMain.js [D 15:36:41.795 LabApp] Checking for /opt/conda/lib/node_modules/vscode-css-languageserver-bin/cssServerMain.js [D 15:36:41.795 LabApp] Checking for /opt/conda/node_modules/vscode-css-languageserver-bin/cssServerMain.js [D 15:36:41.796 LabApp] vscode-css-languageserver-bin/cssServerMain.js not found in node_modules of [PosixPath('/import'), PosixPath('/opt/conda/share/jupyter/lab/staging'), PosixPath('/opt/conda/lib'), PosixPath('/opt/conda')] [D 15:36:41.796 LabApp] Checking for /import/node_modules/vscode-html-languageserver-bin/htmlServerMain.js [D 15:36:41.796 LabApp] Checking for /opt/conda/share/jupyter/lab/staging/node_modules/vscode-html-languageserver-bin/htmlServerMain.js [D 15:36:41.796 LabApp] Checking for /opt/conda/lib/node_modules/vscode-html-languageserver-bin/htmlServerMain.js [D 15:36:41.796 LabApp] Checking for /opt/conda/node_modules/vscode-html-languageserver-bin/htmlServerMain.js [D 15:36:41.796 LabApp] vscode-html-languageserver-bin/htmlServerMain.js not found in node_modules of [PosixPath('/import'), PosixPath('/opt/conda/share/jupyter/lab/staging'), PosixPath('/opt/conda/lib'), PosixPath('/opt/conda')] [D 15:36:41.797 LabApp] Checking for /import/node_modules/vscode-json-languageserver-bin/jsonServerMain.js [D 15:36:41.797 LabApp] Checking for /opt/conda/share/jupyter/lab/staging/node_modules/vscode-json-languageserver-bin/jsonServerMain.js [D 15:36:41.797 LabApp] Checking for /opt/conda/lib/node_modules/vscode-json-languageserver-bin/jsonServerMain.js [D 15:36:41.797 LabApp] Checking for /opt/conda/node_modules/vscode-json-languageserver-bin/jsonServerMain.js [D 15:36:41.797 LabApp] vscode-json-languageserver-bin/jsonServerMain.js not found in node_modules of [PosixPath('/import'), PosixPath('/opt/conda/share/jupyter/lab/staging'), PosixPath('/opt/conda/lib'), PosixPath('/opt/conda')] [D 15:36:41.797 LabApp] Checking for /import/node_modules/yaml-language-server/bin/yaml-language-server [D 15:36:41.798 LabApp] Checking for /opt/conda/share/jupyter/lab/staging/node_modules/yaml-language-server/bin/yaml-language-server [D 15:36:41.798 LabApp] Checking for /opt/conda/lib/node_modules/yaml-language-server/bin/yaml-language-server [D 15:36:41.798 LabApp] Checking for /opt/conda/node_modules/yaml-language-server/bin/yaml-language-server [D 15:36:41.798 LabApp] yaml-language-server/bin/yaml-language-server not found in node_modules of [PosixPath('/import'), PosixPath('/opt/conda/share/jupyter/lab/staging'), PosixPath('/opt/conda/lib'), PosixPath('/opt/conda')] [D 15:36:41.904 LabApp] [lsp] rootUri will be file:///import [D 15:36:41.904 LabApp] [lsp] virtualDocumentsUri will be file:///import/.virtual_documents [D 15:36:41.906 LabApp] [lsp] The following Language Servers will be available: { "pyls": { "argv": [ "/opt/conda/bin/pyls" ], "config_schema": { "properties": { "pyls.configurationSources": { "default": [ "pycodestyle" ], "description": "List of configuration sources to use.", "items": { "enum": [ "pycodestyle", "pyflakes" ], "type": "string" }, "type": "array", "uniqueItems": true }, "pyls.executable": { "default": "pyls", "description": "Language server executable", "type": "string" }, "pyls.plugins.jedi_completion.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.jedi_completion.include_params": { "default": true, "description": "Auto-completes methods and classes with tabstops for each parameter.", "type": "boolean" }, "pyls.plugins.jedi_definition.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.jedi_definition.follow_builtin_imports": { "default": true, "description": "If follow_imports is True will decide if it follow builtin imports.", "type": "boolean" }, "pyls.plugins.jedi_definition.follow_imports": { "default": true, "description": "The goto call will follow imports.", "type": "boolean" }, "pyls.plugins.jedi_hover.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.jedi_references.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.jedi_signature_help.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.jedi_symbols.all_scopes": { "default": true, "description": "If True lists the names of all scopes instead of only the module namespace.", "type": "boolean" }, "pyls.plugins.jedi_symbols.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.mccabe.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.mccabe.threshold": { "default": 15, "description": "The minimum threshold that triggers warnings about cyclomatic complexity.", "type": "number" }, "pyls.plugins.preload.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.preload.modules": { "default": null, "description": "List of modules to import on startup", "items": { "type": "string" }, "type": "array", "uniqueItems": true }, "pyls.plugins.pycodestyle.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.pycodestyle.exclude": { "default": null, "description": "Exclude files or directories which match these patterns.", "items": { "type": "string" }, "type": "array", "uniqueItems": true }, "pyls.plugins.pycodestyle.filename": { "default": null, "description": "When parsing directories, only check filenames matching these patterns.", "items": { "type": "string" }, "type": "array", "uniqueItems": true }, "pyls.plugins.pycodestyle.hangClosing": { "default": null, "description": "Hang closing bracket instead of matching indentation of opening bracket's line.", "type": "boolean" }, "pyls.plugins.pycodestyle.ignore": { "default": null, "description": "Ignore errors and warnings", "items": { "type": "string" }, "type": "array", "uniqueItems": true }, "pyls.plugins.pycodestyle.maxLineLength": { "default": null, "description": "Set maximum allowed line length.", "type": "number" }, "pyls.plugins.pycodestyle.select": { "default": null, "description": "Select errors and warnings", "items": { "type": "string" }, "type": "array", "uniqueItems": true }, "pyls.plugins.pydocstyle.addIgnore": { "default": null, "description": "Ignore errors and warnings in addition to the specified convention.", "items": { "type": "string" }, "type": "array", "uniqueItems": true }, "pyls.plugins.pydocstyle.addSelect": { "default": null, "description": "Select errors and warnings in addition to the specified convention.", "items": { "type": "string" }, "type": "array", "uniqueItems": true }, "pyls.plugins.pydocstyle.convention": { "default": null, "description": "Choose the basic list of checked errors by specifying an existing convention.", "enum": [ "pep257", "numpy" ], "type": "string" }, "pyls.plugins.pydocstyle.enabled": { "default": false, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.pydocstyle.ignore": { "default": null, "description": "Ignore errors and warnings", "items": { "type": "string" }, "type": "array", "uniqueItems": true }, "pyls.plugins.pydocstyle.match": { "default": "(?!test_).*\\.py", "description": "Check only files that exactly match the given regular expression; default is to match files that don't start with 'test_' but end with '.py'.", "type": "string" }, "pyls.plugins.pydocstyle.matchDir": { "default": "[^\\.].*", "description": "Search only dirs that exactly match the given regular expression; default is to match dirs which do not begin with a dot.", "type": "string" }, "pyls.plugins.pydocstyle.select": { "default": null, "description": "Select errors and warnings", "items": { "type": "string" }, "type": "array", "uniqueItems": true }, "pyls.plugins.pyflakes.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.pylint.args": { "default": null, "description": "Arguments to pass to pylint.", "items": { "type": "string" }, "type": "array", "uniqueItems": false }, "pyls.plugins.pylint.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.rope_completion.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.plugins.yapf.enabled": { "default": true, "description": "Enable or disable the plugin.", "type": "boolean" }, "pyls.rope.extensionModules": { "default": null, "description": "Builtin and c-extension modules that are allowed to be imported and inspected by rope.", "type": "string" }, "pyls.rope.ropeFolder": { "default": null, "description": "The name of the folder in which rope stores project configurations and data. Pass `null` for not using such a folder at all.", "items": { "type": "string" }, "type": "array", "uniqueItems": true } }, "title": "Python Language Server Configuration", "type": "object" }, "display_name": "pyls", "env": { "PYTHONUNBUFFERED": "1" }, "extend": [ { "display_name": "pyls-mypy", "install": { "pip": "pip install pyls-mypy" } }, { "display_name": "pyls-black", "install": { "pip": "pip install pyls-black" } }, { "display_name": "pyls-isort", "install": { "pip": "pip install pyls-isort" } } ], "install": { "conda": "conda install -c conda-forge python-language-server", "pip": "pip install python-language-server[all]" }, "languages": [ "python" ], "mime_types": [ "text/python", "text/x-ipython" ], "urls": { "home": "https://github.com/palantir/python-language-server", "issues": "https://github.com/palantir/python-language-server/issues" }, "version": 2 }, "r-languageserver": { "argv": [ "/opt/conda/bin/Rscript", "--slave", "/opt/conda/lib/python3.7/site-packages/jupyter_lsp/specs/helpers/languageserver.R" ], "display_name": "r-languageserver", "install": { "conda": "conda install -c conda-forge r-languageserver", "cran": "install.packages(\"languageserver\")" }, "languages": [ "r" ], "mime_types": [ "text/x-rsrc" ], "urls": { "home": "https://github.com/REditorSupport/languageserver", "issues": "https://github.com/REditorSupport/languageserver/issues" }, "version": 2 } } [I 15:36:42.533 LabApp] JupyterLab extension loaded from /opt/conda/lib/python3.7/site-packages/jupyterlab [I 15:36:42.534 LabApp] JupyterLab application directory is /opt/conda/share/jupyter/lab [I 15:36:42.541 LabApp] Serving notebooks from local directory: /import [I 15:36:42.542 LabApp] The Jupyter Notebook is running at: [I 15:36:42.542 LabApp] http://xxxxx/gie_proxy/JupyterLab/ipython/ [I 15:36:42.542 LabApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).Browser Output
LSP: waiting for Untitled2.ipynb to fully load notebook.js:66:24 Starting WebSocket: ws://xxxxxx/gie_proxy/JupyterLab/ipython/api/kernels/db30e60f-2892-415b-a9c7-a2dc8d95f54f default.js:40:13 LSP: Untitled2.ipynb ready for connection notebook.js:78:20 LSP: will connect using language: r jl_adapter.js:260:43 LSP: connection requested Object { virtual_document: {…}, language: "r", document_path: "Untitled2.ipynb" } connection_manager.js:122:39 LSP: Connection Socket Object { virtual_document: {…}, language: "r", document_path: "Untitled2.ipynb" } connection_manager.js:81:40 TypeError: can't convert undefined to object manager.js:161:47