bollwyvl
commented
2 years ago yep: at present the only way to make that work is to do a real, file-system-level symlink of / of your contents root, e.g. /home/jovyan/.lsp_symlink: the path can be changed, but it's not that exciting:
https://jupyterlab-lsp.readthedocs.io/en/latest/Configuring.html#virtual-documents-dir
Another, more portable (e.g. works on windows) approach is to ensure that the kernel environment is within the contents root, a la .venv or a conda environment.
pmarcellino
krassowski
joezhouchenye
Description
When I try to jump to definition outside of the document I am in it fails and I get this message.
Expected behavior
I expected it to open the file pandas/init.py
Required: installed server extensions
Required: installed lab extensions
Troubleshoot Output
$PATH: /home/jupyter-pmarcellino/.local/bin /home/jupyter-pmarcellino/bin /opt/tljh/user/bin /usr/local/sbin /usr/local/bin /usr/sbin /usr/bin /sbin /bin /snap/bin sys.path: /opt/tljh/user/bin /opt/tljh/user/lib/python37.zip /opt/tljh/user/lib/python3.7 /opt/tljh/user/lib/python3.7/lib-dynload /home/jupyter-pmarcellino/.local/lib/python3.7/site-packages /opt/tljh/user/lib/python3.7/site-packages /srv/shared/beCommon sys.executable: /opt/tljh/user/bin/python sys.version: 3.7.12 | packaged by conda-forge | (default, Oct 26 2021, 06:08:53) [GCC 9.4.0] platform.platform(): Linux-5.4.0-1060-aws-x86_64-with-debian-buster-sid which -a jupyter: /opt/tljh/user/bin/jupyter pip list: Package Version ---------------------------------- -------------------- aiohttp 3.8.1 aiosignal 1.2.0 alabaster 0.7.12 alembic 1.4.2 anaconda-client 1.8.0 anaconda-project 0.10.2 ansi2html 0.0.0 ansiwrap 0.8.4 anyio 3.4.0 appdirs 1.4.4 argcomplete 1.12.3 argh 0.26.2 argon2-cffi 21.1.0 arrow 1.2.1 asn1crypto 1.4.0 asteval 0.9.23 astroid 2.9.0 astropy 4.3.1 async-generator 1.10 async-timeout 4.0.1 asynctest 0.13.0 atomicwrites 1.4.0 attrs 21.2.0 autopep8 1.6.0 Babel 2.9.1 backcall 0.2.0 backports.functools-lru-cache 1.6.4 backports.shutil-get-terminal-size 1.0.0 beautifulsoup4 4.10.0 binaryornot 0.4.4 bitarray 2.3.4 bkcharts 0.2 black 21.12b0 bleach 4.1.0 bokeh 2.4.2 boto 2.49.0 Bottleneck 1.3.2 Brotli 1.0.9 brotlipy 0.7.0 cached-property 1.5.2 cachetools 4.2.2 certifi 2021.10.8 certipy 0.1.3 cffi 1.15.0 chardet 4.0.0 charset-normalizer 2.0.9 click 8.0.3 cloudpickle 2.0.0 clyent 1.2.2 colorama 0.4.4 conda 4.11.0 conda-content-trust 0.1.3 conda-pack 0.6.0 conda-package-handling 1.7.3 conda-token 0.3.0 conda-tree 1.0.3 configparser 5.0.2 contextlib2 21.6.0 convertdate 2.3.2 cookiecutter 1.7.0 crayons 0.4.0 croniter 1.0.7.dev0 cryptography 36.0.0 cvxopt 1.2.7 cycler 0.11.0 Cython 0.29.25 cytoolz 0.11.2 daal4py 2021.4.0 dash 2.0.0 dash-core-components 2.0.0 dash-html-components 2.0.0 dash-renderer 1.9.1 dash-table 5.0.0 dask 2021.12.0 dataclasses 0.8 debugpy 1.5.1 decorator 5.1.0 defusedxml 0.7.1 Deprecated 1.2.13 diff-match-patch 20200713 distributed 2021.12.0 docutils 0.17.1 entrypoints 0.3 et-xmlfile 1.0.1 fastcache 1.1.0 filelock 3.4.0 flake8 4.0.1 Flask 2.0.2 Flask-Compress 0.0.0 fonttools 4.28.3 frozenlist 1.2.0 fsspec 2021.11.1 future 0.18.2 gevent 21.12.0 gitdb 4.0.9 GitPython 3.1.24 glob2 0.7 gmpy2 2.1.0rc1 google-api-core 1.30.0 google-auth 1.32.0 googleapis-common-protos 1.53.0 graphviz 0.19.1 greenlet 1.1.2 grpcio 1.42.0 h5py 3.6.0 HeapDict 1.0.1 hijri-converter 2.2.2 holidays 0.11.3.1 html5lib 1.1 idna 3.1 imagecodecs 2021.8.26 imageio 2.13.3 imagesize 1.3.0 importlib-metadata 4.8.2 importlib-resources 5.4.0 inflection 0.5.1 influxdb-client 1.14.0 iniconfig 1.1.1 intervaltree 3.0.2 ipydatetime 1.2.0 ipykernel 6.6.0 ipympl 0.8.2 ipython 7.30.1 ipython-genutils 0.2.0 ipywidgets 7.6.5 isort 5.10.1 itsdangerous 2.0.1 jdcal 1.4.1 jedi 0.17.2 jeepney 0.7.1 jellyfish 0.8.9 Jinja2 3.0.3 jinja2-time 0.2.0 joblib 1.1.0 json5 0.9.5 jsonschema 4.2.1 jupyter 1.0.0 jupyter-client 6.1.12 jupyter-console 6.4.0 jupyter-core 4.9.1 jupyter-dash 0.4.0 jupyter-lsp 1.5.1 jupyter-server 1.13.1 jupyter-server-mathjax 0.2.3 jupyter-server-proxy 3.2.0 jupyterhub 1.0.0 jupyterlab 3.2.5 jupyterlab-code-formatter 1.4.10 jupyterlab-execute-time 2.1.0 jupyterlab-git 0.34.0 jupyterlab-lsp 3.10.0 jupyterlab-pygments 0.1.2 jupyterlab-server 2.9.0 jupyterlab-widgets 1.0.2 kaleido 0.2.1 keyring 23.4.0 kiwisolver 1.3.2 korean-lunar-calendar 0.2.1 lazy-object-proxy 1.6.0 libarchive-c 3.2 libmambapy 0.19.1 line-profiler 3.3.1 llvmlite 0.37.0 lmfit 1.0.3 locket 0.2.0 lxml 4.6.4 Mako 1.1.3 mamba 0.19.1 MarkupSafe 2.0.1 mathtoolspy 0.3 matplotlib 3.5.1 matplotlib-inline 0.1.3 mccabe 0.6.1 missingno 0.4.2 mistune 0.8.4 mkl-fft 1.3.1 mkl-random 1.2.2 mkl-service 2.4.0 mock 4.0.3 modin 0.12.0 more-itertools 8.12.0 mpmath 1.2.1 msgpack 1.0.3 multidict 5.2.0 multipledispatch 0.6.0 munkres 1.1.4 mypy-extensions 0.4.3 mysql-connector-python 8.0.24 natsort 7.1.1 nbclassic 0.3.4 nbclient 0.5.9 nbconvert 6.3.0 nbdime 3.1.1 nbformat 5.1.2 nbgitpuller 0.7.2 nbresuse 0.3.6 nest-asyncio 1.5.4 networkx 2.6.3 nltk 3.6.5 nose 1.3.7 notebook 6.4.6 nteract-on-jupyter 2.1.3 numba 0.54.1 numexpr 2.8.0 numpy 1.20.3 numpydoc 1.1.0 olefile 0.46 opencensus 0.7.13 opencensus-context 0.1.2 openpyxl 3.0.9 packaging 21.3 pamela 1.0.0 pandas 1.3.4 pandocfilters 1.5.0 papermill 2.3.3 parso 0.7.0 partd 1.2.0 path 16.2.0 pathlib2 2.3.6 pathspec 0.9.0 pathtools 0.1.2 patsy 0.5.2 pep8 1.7.1 pexpect 4.8.0 pickle5 0.0.12 pickleshare 0.7.5 Pillow 8.4.0 pip 21.3.1 pkginfo 1.8.2 platformdirs 2.3.0 plotly 5.4.0 pluggy 1.0.0 ply 3.11 poyo 0.5.0 prometheus-client 0.12.0 prompt-toolkit 3.0.24 protobuf 3.19.1 psutil 5.8.0 ptyprocess 0.7.0 putcall 0.2 py 1.11.0 py-lets-be-rational 1.0.1 py-spy 0.3.7 py-vollib 1.0.1 py-vollib-vectorized 0.1.1 pyarrow 4.0.1 pyasn1 0.4.8 pyasn1-modules 0.2.8 pycairo 1.20.1 pycodestyle 2.8.0 pycosat 0.6.3 pycparser 2.21 pycrypto 2.6.1 pycurl 7.44.1 pydantic 1.8.2 pydocstyle 6.1.1 pyerfa 2.0.0.1 pyflakes 2.4.0 Pygments 2.10.0 PyGObject 3.42.0 pylint 2.12.2 pyls-black 0.4.6 pyls-spyder 0.4.0 PyMeeus 0.5.10 pymongo 4.0.1 PyMySQL 1.0.2 pyodbc 4.0.32 pyOpenSSL 21.0.0 pyparsing 3.0.6 PyQt5 5.12.3 PyQt5_sip 4.19.18 PyQtChart 5.12 PyQtWebEngine 5.12.1 pyrsistent 0.18.0 PySocks 1.7.1 pytest 6.2.5 python-crontab 2.5.1 python-dateutil 2.8.2 python-editor 1.0.4 python-jsonrpc-server 0.4.0 python-language-server 0.36.2 python-lsp-black 1.0.1 python-lsp-jsonrpc 1.0.0 python-lsp-server 1.3.3 python-slugify 5.0.2 pythonnet 2.5.2 pytz 2021.3 PyWavelets 1.2.0 pyxdg 0.27 PyYAML 6.0 pyzmq 22.3.0 QDarkStyle 3.0.2 qstylizer 0.2.1 QtAwesome 1.1.1 qtconsole 5.2.2 QtPy 1.11.3 ray 1.4.0 redis 4.0.2 regex 2021.11.10 requests 2.26.0 requests-unixsocket 0.2.0 retrying 1.3.3 rope 0.22.0 rsa 4.7.2 Rtree 0.9.7 ruamel-yaml-conda 0.15.80 Rx 3.1.1 scikit-image 0.19.0 scikit-learn 1.0.1 scikit-learn-intelex 2021.20211123.141420 scipy 1.5.3 seaborn 0.11.2 SecretStorage 3.3.1 selenium 3.141.0 Send2Trash 1.8.0 setproctitle 1.2.2 setuptools 59.4.0 setuptools-scm 6.3.2 simpervisor 0.4 simplegeneric 0.8.1 simplejson 3.17.5 singledispatch 0.0.0 sip 4.19.25 six 1.16.0 slack-sdk 3.1.0 smmap 3.0.5 sniffio 1.2.0 snowballstemmer 2.2.0 sortedcollections 2.1.0 sortedcontainers 2.4.0 soupsieve 2.3.1 Sphinx 4.3.1 sphinxcontrib-applehelp 1.0.2 sphinxcontrib-devhelp 1.0.2 sphinxcontrib-htmlhelp 2.0.0 sphinxcontrib-jsmath 1.0.1 sphinxcontrib-qthelp 1.0.3 sphinxcontrib-serializinghtml 1.1.5 sphinxcontrib-websupport 1.2.4 spyder 5.2.0 spyder-kernels 2.2.0 statsmodels 0.13.1 swifter 1.0.9 sympy 1.9 tables 3.6.1 TBB 0.2 tblib 1.7.0 tenacity 8.0.1 terminado 0.12.1 testpath 0.5.0 text-unidecode 1.3 textdistance 4.2.2 textwrap3 0.9.2 threadpoolctl 3.0.0 three-merge 0.1.1 tifffile 2021.11.2 tinycss 0.4 tinycss2 1.1.1 toml 0.10.2 tomli 1.2.2 toolz 0.11.2 tornado 6.1 tqdm 4.62.3 traitlets 5.1.1 typed-ast 1.5.1 typing_extensions 4.0.1 ujson 4.2.0 uncertainties 3.1.6 unicodecsv 0.14.1 unicodedata2 13.0.0.post2 Unidecode 1.3.2 urllib3 1.26.7 voila 0.3.0 watchdog 2.1.6 wcwidth 0.2.5 webdriver-manager 3.4.2 webencodings 0.5.1 websocket-client 1.2.3 websockets 10.1 Werkzeug 2.0.1 wheel 0.37.0 whichcraft 0.6.1 widgetsnbextension 3.5.2 wrapt 1.13.3 wurlitzer 3.0.2 xeus-python-shell 0.1.7 xlrd 2.0.1 XlsxWriter 3.0.2 xlwt 1.3.0 yapf 0.31.0 yarl 1.7.2 zict 2.0.0 zipp 3.6.0 zope.event 4.5.0 zope.interface 5.4.0 conda list: # packages in environment at /opt/tljh/user: # # Name Version Build Channel _anaconda_depends 2021.11 py37_0 _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 1_llvm conda-forge aiohttp 3.8.1 py37h5e8e339_0 conda-forge aiosignal 1.2.0 pyhd8ed1ab_0 conda-forge alabaster 0.7.12 py_0 conda-forge alembic 1.4.2 pypi_0 pypi alsa-lib 1.2.3 h516909a_0 conda-forge anaconda custom py37_1 anaconda-client 1.8.0 pyhd8ed1ab_0 conda-forge anaconda-project 0.10.2 pyhd8ed1ab_0 conda-forge ansi2html 1.6.0 py37h89c1867_2 conda-forge ansiwrap 0.8.4 py_0 conda-forge anyio 3.4.0 py37h89c1867_0 conda-forge appdirs 1.4.4 pyh9f0ad1d_0 conda-forge argcomplete 1.12.3 pyhd8ed1ab_2 conda-forge argh 0.26.2 pyh9f0ad1d_1002 conda-forge argon2-cffi 21.1.0 py37h5e8e339_2 conda-forge argparse 1.4.0 pypi_0 pypi arrow 1.2.1 pyhd8ed1ab_0 conda-forge asn1crypto 1.4.0 pyh9f0ad1d_0 conda-forge asteval 0.9.23 pyhd8ed1ab_0 conda-forge astroid 2.9.0 py37h89c1867_0 conda-forge astropy 4.3.1 py37hb1e94ed_2 conda-forge async-timeout 4.0.1 pyhd8ed1ab_0 conda-forge async_generator 1.10 py_0 conda-forge asynctest 0.13.0 py_0 conda-forge atk-1.0 2.36.0 h3371d22_4 conda-forge atomicwrites 1.4.0 pyh9f0ad1d_0 conda-forge attrs 21.2.0 pyhd8ed1ab_0 conda-forge autopep8 1.6.0 pyhd8ed1ab_1 conda-forge babel 2.9.1 pyh44b312d_0 conda-forge backcall 0.2.0 pyh9f0ad1d_0 conda-forge backports 1.0 py_2 conda-forge backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge backports.shutil_get_terminal_size 1.0.0 py_3 conda-forge beautifulsoup4 4.10.0 pyha770c72_0 conda-forge binaryornot 0.4.4 py_1 conda-forge bitarray 2.3.4 py37h5e8e339_2 conda-forge bkcharts 0.2 py37_0 black 21.12b0 pyhd8ed1ab_0 conda-forge blas 2.3 openblas conda-forge bleach 4.1.0 pyhd8ed1ab_0 conda-forge blosc 1.21.0 h9c3ff4c_0 conda-forge bokeh 2.4.2 py37h89c1867_0 conda-forge boto 2.49.0 py_0 conda-forge bottleneck 1.3.2 py37hb1e94ed_5 conda-forge brotli 1.0.9 h7f98852_6 conda-forge brotli-bin 1.0.9 h7f98852_6 conda-forge brotli-python 1.0.9 py37hcd2ae1e_6 conda-forge brotlipy 0.7.0 py37h5e8e339_1003 conda-forge brunsli 0.1 h9c3ff4c_0 conda-forge bzip2 1.0.8 h7f98852_4 conda-forge c-ares 1.18.1 h7f98852_0 conda-forge c-blosc2 2.0.4 h5f21a17_1 conda-forge ca-certificates 2021.10.26 h06a4308_2 cached-property 1.5.2 hd8ed1ab_1 conda-forge cached_property 1.5.2 pyha770c72_1 conda-forge cachetools 4.2.2 pypi_0 pypi cairo 1.16.0 h6cf1ce9_1008 conda-forge certifi 2021.10.8 py37h06a4308_2 certipy 0.1.3 pypi_0 pypi cffi 1.15.0 py37h036bc23_0 conda-forge cfitsio 3.470 h2e3daa1_7 conda-forge chardet 4.0.0 py37h89c1867_2 conda-forge charls 2.2.0 h9c3ff4c_0 conda-forge charset-normalizer 2.0.9 pyhd8ed1ab_0 conda-forge click 8.0.3 py37h89c1867_1 conda-forge cloudpickle 2.0.0 pyhd8ed1ab_0 conda-forge clyent 1.2.2 py_1 conda-forge colorama 0.4.4 pyh9f0ad1d_0 conda-forge conda 4.11.0 py37h89c1867_0 conda-forge conda-content-trust 0.1.3 pyhd8ed1ab_0 conda-forge conda-pack 0.6.0 pyhd3deb0d_0 conda-forge conda-package-handling 1.7.3 py37h5e8e339_1 conda-forge conda-token 0.3.0 pyhd3eb1b0_0 conda-tree 1.0.4 pyhd8ed1ab_0 conda-forge configparser 5.0.2 pypi_0 pypi contextlib2 21.6.0 pyhd8ed1ab_0 conda-forge convertdate 2.3.2 pyhd8ed1ab_0 conda-forge cookiecutter 1.7.0 py_0 conda-forge crayons 0.4.0 pypi_0 pypi croniter 1.0.7.dev0 pypi_0 pypi cryptography 36.0.0 py37hf1a17b8_0 conda-forge curl 7.80.0 h2574ce0_0 conda-forge cvxopt 1.2.7 py37hf4c416c_1 conda-forge cycler 0.11.0 pyhd8ed1ab_0 conda-forge cython 0.29.25 py37hcd2ae1e_0 conda-forge cytoolz 0.11.2 py37h5e8e339_1 conda-forge daal4py 2021.4.0 py37h78b71dc_0 dal 2021.4.0 ha770c72_729 conda-forge dash 2.0.0 pyhd8ed1ab_0 conda-forge dash-core-components 2.0.0 pyhd8ed1ab_0 conda-forge dash-html-components 2.0.0 pyhd8ed1ab_0 conda-forge dash-renderer 1.9.1 pyhd8ed1ab_0 conda-forge dash-table 5.0.0 pyhd8ed1ab_0 conda-forge dask 2021.12.0 pyhd8ed1ab_0 conda-forge dask-core 2021.12.0 pyhd8ed1ab_0 conda-forge dataclasses 0.8 pyhc8e2a94_3 conda-forge dbus 1.13.6 h48d8840_2 conda-forge debugpy 1.5.1 py37hcd2ae1e_0 conda-forge decorator 5.1.0 pyhd8ed1ab_0 conda-forge defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge deprecated 1.2.13 pyh6c4a22f_0 conda-forge diff-match-patch 20200713 pyh9f0ad1d_0 conda-forge distributed 2021.12.0 py37h89c1867_0 conda-forge docutils 0.17.1 py37h89c1867_1 conda-forge dsdp 5.8 hd9d9efa_1203 conda-forge entrypoints 0.3 pyhd8ed1ab_1003 conda-forge et_xmlfile 1.0.1 py_1001 conda-forge expat 2.4.1 h9c3ff4c_0 conda-forge fastcache 1.1.0 py37h5e8e339_3 conda-forge fftw 3.3.8 nompi_hfc0cae8_1114 conda-forge filelock 3.4.0 pyhd8ed1ab_0 conda-forge flake8 4.0.1 pyhd8ed1ab_0 conda-forge flask 2.0.2 pyhd8ed1ab_0 conda-forge flask-compress 1.10.1 pyhd8ed1ab_0 conda-forge font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge font-ttf-inconsolata 3.000 h77eed37_0 conda-forge font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge font-ttf-ubuntu 0.83 hab24e00_0 conda-forge fontconfig 2.13.1 hba837de_1005 conda-forge fonts-conda-ecosystem 1 0 conda-forge fonts-conda-forge 1 0 conda-forge fonttools 4.28.3 py37h5e8e339_0 conda-forge freetype 2.10.4 h0708190_1 conda-forge fribidi 1.0.10 h36c2ea0_0 conda-forge frozenlist 1.2.0 py37h5e8e339_1 conda-forge fsspec 2021.11.1 pyhd8ed1ab_0 conda-forge future 0.18.2 py37h89c1867_4 conda-forge gdk-pixbuf 2.42.6 h04a7f16_0 conda-forge get_terminal_size 1.0.0 haa9412d_0 gettext 0.19.8.1 h73d1719_1008 conda-forge gevent 21.12.0 py37h5e8e339_0 conda-forge giflib 5.2.1 h36c2ea0_2 conda-forge gitdb 4.0.9 pyhd8ed1ab_0 conda-forge gitpython 3.1.24 pyhd8ed1ab_0 conda-forge glib 2.70.2 h780b84a_0 conda-forge glib-tools 2.70.2 h780b84a_0 conda-forge glob2 0.7 py_0 conda-forge glpk 4.65 h9202a9a_1004 conda-forge gmp 6.2.1 h58526e2_0 conda-forge gmpy2 2.1.0rc1 py37h025e8b9_0 conda-forge google-api-core 1.30.0 pypi_0 pypi google-auth 1.32.0 pypi_0 pypi googleapis-common-protos 1.53.0 pypi_0 pypi graphite2 1.3.13 h58526e2_1001 conda-forge graphviz 2.50.0 h85b4f2f_1 conda-forge greenlet 1.1.2 py37hcd2ae1e_1 conda-forge grpcio 1.42.0 py37hb27c1af_0 conda-forge gsl 2.7 he838d99_0 conda-forge gst-plugins-base 1.18.5 hf529b03_2 conda-forge gstreamer 1.18.5 h9f60fe5_2 conda-forge gtk2 2.24.33 h539f30e_1 conda-forge gts 0.7.6 h64030ff_2 conda-forge h5py 3.6.0 nompi_py37hd308b1e_100 conda-forge harfbuzz 3.1.1 h83ec7ef_0 conda-forge hdf5 1.12.1 h69dfa17_1 heapdict 1.0.1 py_0 conda-forge hijri-converter 2.2.2 pyhd8ed1ab_0 conda-forge holidays 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xorg-kbproto 1.0.7 h7f98852_1002 conda-forge xorg-libice 1.0.10 h7f98852_0 conda-forge xorg-libsm 1.2.3 hd9c2040_1000 conda-forge xorg-libx11 1.7.2 h7f98852_0 conda-forge xorg-libxau 1.0.9 h7f98852_0 conda-forge xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge xorg-libxext 1.3.4 h7f98852_1 conda-forge xorg-libxrender 0.9.10 h7f98852_1003 conda-forge xorg-renderproto 0.11.1 h7f98852_1002 conda-forge xorg-xextproto 7.3.0 h7f98852_1002 conda-forge xorg-xproto 7.0.31 h7f98852_1007 conda-forge xz 5.2.5 h516909a_1 conda-forge yaml 0.2.5 h516909a_0 conda-forge yaml-cpp 0.6.3 he1b5a44_4 conda-forge yapf 0.31.0 pyhd8ed1ab_0 conda-forge yarl 1.7.2 py37h5e8e339_1 conda-forge zeromq 4.3.4 h9c3ff4c_1 conda-forge zfp 0.5.5 h9c3ff4c_8 conda-forge zict 2.0.0 py_0 conda-forge zipp 3.6.0 pyhd8ed1ab_0 conda-forge zlib 1.2.11 h36c2ea0_1013 conda-forge zope 1.0 py37_1 zope.event 4.5.0 pyh9f0ad1d_0 conda-forge zope.interface 5.4.0 py37h5e8e339_1 conda-forge zstd 1.5.0 ha95c52a_0 conda-forgeBrowser Output (recommended for all interface issues)