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jupyter / atom-notebook

[Deprecated] Jupyter Notebook, but inside Atom.
MIT License
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Uncaught Error: Kernel is not ready to send a message #39

Open cnheider opened 8 years ago

cnheider commented 8 years ago

Enter steps to reproduce below: 1. ... 2. ... Atom Version: 1.6.0-beta6-532c45b System: Debian GNU/Linux Thrown From: jupyter-notebook https://github.com/jupyter/atom-notebook package, v0.0.9 ### Stack Trace Uncaught Error: Kernel is not ready to send a message At /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/ReactErrorUtils.js:53 Error: Kernel is not ready to send a message at Error native at Kernel.execute /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/jupyter-js-services/lib/kernel.js:622:19 at NotebookEditor.runCell /home/heider/.atom/packages/jupyter-notebook/lib/notebook-editor.js:186:29 at Object.NotebookEditor.onAction as ID_1 /home/heider/.atom/packages/jupyter-notebook/lib/notebook-editor.js:108:16 at Dispatcher._invokeCallback /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/flux/lib/Dispatcher.js:198:24 at Dispatcher.dispatch /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/flux/lib/Dispatcher.js:174:14 at runActiveCell /home/heider/.atom/packages/jupyter-notebook/lib/notebook-editor-view.js:74:16 at Object.invokeGuardedCallback /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/ReactErrorUtils.js:27:12 at executeDispatch /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/EventPluginUtils.js:79:21 at Object.executeDispatchesInOrder /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/EventPluginUtils.js:102:5 at executeDispatchesAndRelease /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/EventPluginHub.js:43:22 at executeDispatchesAndReleaseTopLevel /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/EventPluginHub.js:54:10 at Array.forEach native at forEachAccumulated /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/forEachAccumulated.js:23:9 at Object.EventPluginHub.processEventQueue /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/EventPluginHub.js:259:7 at runEventQueueInBatch /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/ReactEventEmitterMixin.js:18:18 at Object.ReactEventEmitterMixin.handleTopLevel as _handleTopLevel /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/ReactEventEmitterMixin.js:34:5 at handleTopLevelWithoutPath /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/ReactEventListener.js:93:24 at handleTopLevelImpl /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/ReactEventListener.js:73:3 at ReactDefaultBatchingStrategyTransaction.Mixin.perform /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/Transaction.js:136:20 at Object.ReactDefaultBatchingStrategy.batchedUpdates /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/ReactDefaultBatchingStrategy.js:62:19 at Object.batchedUpdates /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/ReactUpdates.js:94:20 at ReactEventListener.dispatchEvent /home/heider/github/dotfiles/.atom/packages/jupyter-notebook/node_modules/react/lib/ReactEventListener.js:204:20 ### Commands -1:03.3.0 snippets:next-tab-stop atom-text-editor.editor.is-focused -1:03.3.0 snippets:expand atom-text-editor.editor.is-focused -1:03.1.0 editor:indent atom-text-editor.editor.is-focused 8x -1:02.5.0 core:backspace atom-text-editor.editor.is-focused -0:54.7.0 markdown-WRITEr:insert-new-line atom-text-editor.editor.is-focused -0:54.7.0 editor:newline atom-text-editor.editor.is-focused -0:53.9.0 core:backspace atom-text-editor.editor.is-focused -0:53.6.0 jupyter-notebook-atom:run atom-text-editor.editor.is-focused -0:52.1.0 markdown-WRITEr:insert-new-line atom-text-editor.editor.is-focused -0:52.1.0 editor:newline atom-text-editor.editor.is-focused 2x -0:51.4.0 core:backspace atom-text-editor.editor.is-focused 2x -0:49.2.0 jupyter-notebook-atom:run atom-text-editor.editor.is-focused -0:11.6.0 advanced-OPEN-file:toggle atom-text-editor.editor.is-focused 40x -0:10.5.0 core:backspace atom-text-editor.path-input.editor.mini.is-focused 2x -0:05.9.0 advanced-OPEN-file:move-cursor-down atom-text-editor.path-input.editor.mini.is-focused -0:05.4.0 core:CONFIRM atom-text-editor.path-input.editor.mini.is-focused ### Config json { core : { audioBeep : false, autoHideMenuBar : true, themes : solarized-one-light-ui , solarized-light-syntax } } ### Installed Packages coffee # User advanced-OPEN-file, v0.14.3 autocomplete-clang, v0.8.9 autocomplete-go, v0.2.0 autocomplete-python, v1.7.0 build, v0.55.0 color-picker, v2.1.1 cursor-blink-interval, v0.3.1 environment, v1.1.1 git-log, v0.4.1 go-config, v0.3.3 go-get, v0.1.1 jupyter-notebook, v0.0.9 language-gitignore, v0.2.0 language-ini, v1.14.0 language-latex, v0.6.1 latexer, v0.3.0 linter, v1.11.3 linter-chktex, v1.2.5 linter-gcc, v0.6.8 linter-markdown, v1.5.0 markdown-preview-OPENer, v0.1.1 markdown-scroll-sync, v2.1.2 markdown-WRITEr, v2.3.2 minimap, v4.20.0 minimap-bookmarks, v0.3.0 minimap-codeglance, v0.4.5 minimap-cursorline, v0.1.0 minimap-find-and-replace, v4.5.0 minimap-git-diff, v4.2.0 minimap-highlight-selected, v4.4.0 minimap-linter, v1.1.1 minimap-pigments, v0.2.0 minimap-selection, v4.4.0 package-sync, v1.0.0 pigments, v0.24.4 platformio-ide, v1.0.5 platformio-ide-terminal, v2.0.2 project-manager, v2.7.6 python-tools, v0.6.7 solarized-one-light-ui, v1.1.11 tool-bar, v0.3.0 travis-ci-status, v1.0.0 you-complete-me, v0.7.1 # Dev No dev packages

gnestor commented 8 years ago

@cnHeider It sounds like jupyter is not in Atom's PATH, therefore the jupyter kernelgatewaycommand used by atom-notebook is not spawning a kernel gateway instance.

  1. Run which jupyter or jupyter --paths to determine where your jupyter binary is located
  2. In Atom, run process.env.PATH and confirm that the path to your jupyter binary is included in Atom's PATH
  3. If it's not included, add it to atom-notebook's settings (Command Pallette > Settings View > View Installed Packages > jupyter-notebook > Path to jupyter binary

If it is included, confirm that jupyter and jupyter kernel gateway is installed: pip3 install jupyter jupyter_kernel_gateway