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jupyter / jupyter-sphinx

Sphinx extension for rendering of Jupyter interactive widgets.
https://jupyter-sphinx.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
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0.4.0: pytest is failing in `tests/test_execute.py::test_save_script` unit because hardcoded python interpreter name #222

Open kloczek opened 1 year ago

kloczek commented 1 year ago

Looks like pytest is failing in tests/test_execute.py::test_save_script because hardcoded python interpreter name. Insterd it should be used sys.executable. pytest as well currently shows some PendingDeprecationWarning warnings. Here is pytest output:

```console + PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-jupyter-sphinx-0.4.0-4.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-jupyter-sphinx-0.4.0-4.fc35.x86_64/usr/lib/python3.8/site-packages + /usr/bin/pytest -ra -m 'not network' ============================= test session starts ============================== platform linux -- Python 3.8.16, pytest-7.2.2, pluggy-1.0.0 rootdir: /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0 collected 35 items tests/test_execute.py ...........................Fs...... [100%] =================================== FAILURES =================================== _______________________________ test_save_script _______________________________ doctree = .doctree at 0x7fac32562040> def test_save_script(doctree): source = """ .. jupyter-kernel:: python3 :id: test .. jupyter-execute:: a = 1 print(a) """ _, app, _ = doctree(source, return_all=True) outdir = Path(app.outdir) saved_text = (outdir / "../jupyter_execute/test.py").read_text() > assert saved_text.startswith("#!/usr/bin/python3") E AssertionError: assert False E + where False = ('#!/usr/bin/python3') E + where = '#!/usr/bin/env python\n# coding: utf-8\n\n# In[1]:\n\n\na = 1\nprint(a)\n\n'.startswith tests/test_execute.py:637: AssertionError =============================== warnings summary =============================== ../../../../../usr/lib/python3.8/site-packages/jupyter_client/connect.py:27 /usr/lib/python3.8/site-packages/jupyter_client/connect.py:27: DeprecationWarning: Jupyter is migrating its paths to use standard platformdirs given by the platformdirs library. To remove this warning and see the appropriate new directories, set the environment variable `JUPYTER_PLATFORM_DIRS=1` and then run `jupyter --paths`. The use of platformdirs will be the default in `jupyter_core` v6 from jupyter_core.paths import jupyter_data_dir ../../../../../usr/lib/python3.8/site-packages/traitlets/traitlets.py:1016: 98 warnings /usr/lib/python3.8/site-packages/traitlets/traitlets.py:1016: DeprecationWarning: Widget._active_widgets is deprecated. value = getattr(cls, name) ../../../../../usr/lib/python3.8/site-packages/traitlets/traitlets.py:1016: 98 warnings /usr/lib/python3.8/site-packages/traitlets/traitlets.py:1016: DeprecationWarning: Widget._widget_types is deprecated. value = getattr(cls, name) ../../../../../usr/lib/python3.8/site-packages/traitlets/traitlets.py:1016: 98 warnings /usr/lib/python3.8/site-packages/traitlets/traitlets.py:1016: DeprecationWarning: Widget.widget_types is deprecated. value = getattr(cls, name) ../../../../../usr/lib/python3.8/site-packages/traitlets/traitlets.py:1016: 98 warnings /usr/lib/python3.8/site-packages/traitlets/traitlets.py:1016: DeprecationWarning: Widget.widgets is deprecated. value = getattr(cls, name) tests/test_execute.py::test_basic[html] tests/test_execute.py::test_basic[html] /usr/lib64/python3.8/importlib/__init__.py:127: RemovedInSphinx80Warning: The alias 'sphinx.util.progress_message' is deprecated, use 'sphinx.util.display.progress_message' instead. Check CHANGES for Sphinx API modifications. return _bootstrap._gcd_import(name[level:], package, level) tests/test_execute.py: 40 warnings /home/tkloczko/rpmbuild/BUILDROOT/python-jupyter-sphinx-0.4.0-4.fc35.x86_64/usr/lib/python3.8/site-packages/jupyter_sphinx/ast.py:628: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). for cell_node in self.document.traverse(JupyterCellNode): tests/test_execute.py: 39 warnings /home/tkloczko/rpmbuild/BUILDROOT/python-jupyter-sphinx-0.4.0-4.fc35.x86_64/usr/lib/python3.8/site-packages/jupyter_sphinx/execute.py:126: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). if not doctree.traverse(JupyterCellNode): tests/test_execute.py: 38 warnings /home/tkloczko/rpmbuild/BUILDROOT/python-jupyter-sphinx-0.4.0-4.fc35.x86_64/usr/lib/python3.8/site-packages/jupyter_sphinx/execute.py:143: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). doctree.traverse(lambda n: isinstance(n, jupyter_nodes)), tests/test_execute.py::test_basic[html] tests/test_execute.py::test_basic[singlehtml] /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:82: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_hide_output /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:100: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_hide_code /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:115: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_code_below /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:130: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_linenos /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:145: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_linenos /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:159: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_linenos_conf_option /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:171: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_continue_linenos_conf_option /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:189: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_continue_linenos_conf_option /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:213: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). cell0, cell1 = tree.traverse(JupyterCellNode) tests/test_execute.py::test_continue_linenos_conf_option /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:243: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). cell0, cell1 = tree.traverse(JupyterCellNode) tests/test_execute.py::test_emphasize_lines /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:277: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). cell0, cell1 = tree.traverse(JupyterCellNode) tests/test_execute.py::test_execution_environment_carries_over /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:295: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). _, cell1 = tree.traverse(JupyterCellNode) tests/test_execute.py::test_kernel_restart /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:316: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). _, cell1 = tree.traverse(JupyterCellNode) tests/test_execute.py::test_raises /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:337: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_raises /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:348: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_widgets /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:361: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). assert len(list(tree.traverse(JupyterWidgetViewNode))) == 1 tests/test_execute.py::test_widgets /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:362: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). assert len(list(tree.traverse(JupyterWidgetStateNode))) == 1 tests/test_execute.py::test_javascript /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:373: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (node,) = list(tree.traverse(raw)) tests/test_execute.py::test_stdout /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:385: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_stderr /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:401: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_stderr /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:413: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_thebe_hide_output tests/test_execute.py::test_thebe_hide_code tests/test_execute.py::test_thebe_code_below tests/test_execute.py::test_thebe_button_auto tests/test_execute.py::test_thebe_button_manual /home/tkloczko/rpmbuild/BUILDROOT/python-jupyter-sphinx-0.4.0-4.fc35.x86_64/usr/lib/python3.8/site-packages/jupyter_sphinx/execute.py:131: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). if not doctree.traverse(ThebeButtonNode): tests/test_execute.py::test_thebe_hide_output /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:431: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_thebe_hide_code /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:450: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_thebe_code_below /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:475: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_thebe_button_auto /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:499: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). assert len(tree.traverse(ThebeButtonNode)) == 1 tests/test_execute.py::test_thebe_button_manual /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:512: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). assert len(tree.traverse(ThebeButtonNode)) == 1 tests/test_execute.py::test_thebe_button_none /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:519: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). assert len(tree.traverse(ThebeButtonNode)) == 0 tests/test_execute.py::test_latex tests/test_execute.py::test_latex tests/test_execute.py::test_latex tests/test_execute.py::test_latex /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:534: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_latex tests/test_execute.py::test_latex tests/test_execute.py::test_latex tests/test_execute.py::test_latex /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:536: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). assert next(iter(celloutput.traverse(math_block))).astext() == r"\int" tests/test_execute.py::test_cell_output_to_nodes tests/test_execute.py::test_cell_output_to_nodes /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:577: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (image_node,) = output_node.traverse(image) tests/test_execute.py::test_input_cell /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:675: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_input_cell_linenos /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:691: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_output_cell /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:710: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (cell,) = tree.traverse(JupyterCellNode) tests/test_execute.py::test_multiple_directives /home/tkloczko/rpmbuild/BUILD/jupyter-sphinx-0.4.0/tests/test_execute.py:744: PendingDeprecationWarning: nodes.Node.traverse() is obsoleted by Node.findall(). (ex, jin) = tree.traverse(JupyterCellNode) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ SKIPPED [1] tests/test_execute.py:642: could not import 'bash_kernel': No module named 'bash_kernel' FAILED tests/test_execute.py::test_save_script - AssertionError: assert False ======= 1 failed, 33 passed, 1 skipped, 559 warnings in 80.16s (0:01:20) ======= ```
12rambau commented 1 year ago

I think I'm facing the same issue in my most recent builds: https://readthedocs.org/projects/pygaul/builds/21575953/

In short: 

Unable to find kernel (exception: No such kernel named python3)
12rambau commented 1 year ago

I solved my issue by adding "ipykernel" in my documentation deps, it's urprising that it's not already included by one of jupyter-sphinx's