chore: update the commit hooks list

[12rambau]

As mentioned in #237, I updated the list of pre-commit to something more comfortable.

The new list is more restricted and cover pretty much the same things as many were overlapping:

• black for the python file linting (I just aligned the line length to ruff at 100 characters)
• prettier for anything else (json and yaml schema are tested as well for parsing purposes)
• nbstripout because we have notebooks
• doc8 (maybe not the best choice but the only one I know for Sphinx checks)
• ruff, the ligthning fast swiss army knife PEP checker

I also change the lint hatch session so it run the exact same thing as the one in the test suit.

I was forced to add some ignore in ruff for documentation issues.