Closed Charles-Gagnon closed 1 year ago
@afshin @kevin-bates @blink1073 FYI since you were involved in the original PR
We've tracked the issue down to the traitlets package. With 5.10.0 we see this issue, if we downgrade to 5.9.0 then it goes away.
This is a typo because it should be jupyter_server.services.contents
, not jupyter_server.contents.services
, but if updating traitlets is the cause, then traitlets has introduced a breaking change in 5.10 in how it handles classes that don't import in this situation. the bug is purely in notebook, which imported a name not in the traitlets API from traitlets, instead of from the standard library.
@Charles-Gagnon Thanks for opening the issue. I am also getting the same error when I run jupyter notebook
in the terminal.
File "/home/yaseen/anaconda3/envs/ptenv/lib/python3.11/site-packages/notebook/traittypes.py", line 235, in _resolve_classes
klass = self._resolve_string(klass)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/yaseen/anaconda3/envs/ptenv/lib/python3.11/site-packages/traitlets/traitlets.py", line 2009, in _resolve_string
return import_item(string)
^^^^^^^^^^^^^^^^^^^
File "/home/yaseen/anaconda3/envs/ptenv/lib/python3.11/site-packages/traitlets/utils/importstring.py", line 30, in import_item
module = __import__(package, fromlist=[obj])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
**ModuleNotFoundError: No module named 'jupyter_server.contents'**
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/yaseen/anaconda3/envs/ptenv/bin/jupyter-notebook", line 10, in <module>
sys.exit(main())
^^^^^^
File "/home/yaseen/anaconda3/envs/ptenv/lib/python3.11/site-packages/jupyter_core/application.py", line 285, in launch_instance
return super().launch_instance(argv=argv, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/yaseen/anaconda3/envs/ptenv/lib/python3.11/site-packages/traitlets/config/application.py", line 1044, in launch_instance
app = cls.instance(**kwargs)
^^^^^^^^^^^^^^^^^^^^^^
File "/home/yaseen/anaconda3/envs/ptenv/lib/python3.11/site-packages/traitlets/config/configurable.py", line 555, in instance
inst = cls(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^
File "/home/yaseen/anaconda3/envs/ptenv/lib/python3.11/site-packages/traitlets/traitlets.py", line 1295, in __new__
inst.setup_instance(*args, **kwargs)
File "/home/yaseen/anaconda3/envs/ptenv/lib/python3.11/site-packages/traitlets/traitlets.py", line 1338, in setup_instance
super(HasTraits, self).setup_instance(*args, **kwargs)
File "/home/yaseen/anaconda3/envs/ptenv/lib/python3.11/site-packages/traitlets/traitlets.py", line 1314, in setup_instance
init(self)
File "/home/yaseen/anaconda3/envs/ptenv/lib/python3.11/site-packages/notebook/traittypes.py", line 226, in instance_init
self._resolve_classes()
File "/home/yaseen/anaconda3/envs/ptenv/lib/python3.11/site-packages/notebook/traittypes.py", line 238, in _resolve_classes
warn(f"{klass} is not importable. Is it installed?", ImportWarning)
TypeError: warn() missing 1 required keyword-only argument: 'stacklevel'
Downgrading traitlets
to version 5.9.0
fixes it in my case as well: conda install traitlets==5.9.0 -c conda-forge
Related: the buggy / breaking version of traitlets
is also installed by jupyter_core
so it arguably should be also pinned here:
https://github.com/jupyter/jupyter_core/blob/main/pyproject.toml#L21C4-L21C13
Note that jupyter_core
is used by both notebook
AND jupyterlab
... propagating the bug to both these IDEs.
For clarity, this is not a bug in traitlets, it is a bug in notebook v6, as @minrk said above.
Verified that fix released in 6.5.6 resolves this issue. Thanks!
While the fix is good, perhaps the end of the traceback (about stacklevel
) is more the breaking thing at play here: is there really no way that argument could have some kind of default value? It's of course it's already trying to emit a warning, but it doesn't seem like nested warnings would actually be an issue.
It didnt work for me...
Traceback (most recent call last):
File "/opt/anaconda/lib/python3.11/site-packages/notebook/traittypes.py", line 235, in _resolve_classes
klass = self._resolve_string(klass)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/anaconda/lib/python3.11/site-packages/traitlets/traitlets.py", line 2015, in _resolve_string
return import_item(string)
^^^^^^^^^^^^^^^^^^^
File "/opt/anaconda/lib/python3.11/site-packages/traitlets/utils/importstring.py", line 33, in import_item
module = __import__(package, fromlist=[obj])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'jupyter_server.contents'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/opt/anaconda/bin/jupyter-notebook", line 11, in
sys.exit(main())
^^^^^^
File "/opt/anaconda/lib/python3.11/site-packages/jupyter_core/application.py", line 283, in launch_instance
super().launch_instance(argv=argv, **kwargs)
File "/opt/anaconda/lib/python3.11/site-packages/traitlets/config/application.py", line 1073, in launch_instance
app = cls.instance(**kwargs)
^^^^^^^^^^^^^^^^^^^^^^
File "/opt/anaconda/lib/python3.11/site-packages/traitlets/config/configurable.py", line 583, in instance
inst = cls(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^
File "/opt/anaconda/lib/python3.11/site-packages/traitlets/traitlets.py", line 1292, in __new__
inst.setup_instance(*args, **kwargs)
File "/opt/anaconda/lib/python3.11/site-packages/traitlets/traitlets.py", line 1335, in setup_instance
super(HasTraits, self).setup_instance(*args, **kwargs)
File "/opt/anaconda/lib/python3.11/site-packages/traitlets/traitlets.py", line 1311, in setup_instance
init(self)
File "/opt/anaconda/lib/python3.11/site-packages/notebook/traittypes.py", line 226, in instance_init
self._resolve_classes()
File "/opt/anaconda/lib/python3.11/site-packages/notebook/traittypes.py", line 238, in _resolve_classes
warn(f"{klass} is not importable. Is it installed?", ImportWarning)
TypeError: warn() missing 1 required keyword-only argument: 'stacklevel'
My conda list:
eduardo@MiPcLinux:~$ pip freeze | grep traitlets
traitlets==5.9.0
eduardo@MiPcLinux:~$ conda list
# packages in environment at /opt/anaconda:
#
# Name Version Build Channel
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attr 2.5.1 h166bdaf_1 conda-forge
attrs 23.2.0 pyh71513ae_0 conda-forge
automat 22.10.0 pyhd8ed1ab_0 conda-forge
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aws-c-common 0.6.8 h5eee18b_1
aws-c-event-stream 0.1.6 h6a678d5_6
aws-checksums 0.1.11 h5eee18b_2
aws-sdk-cpp 1.8.185 h721c034_1
babel 2.14.0 pyhd8ed1ab_0 conda-forge
bcrypt 4.1.2 py311h46250e7_0 conda-forge
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binaryornot 0.4.4 py_1 conda-forge
black 24.1.0 py311h38be061_0 conda-forge
blas 1.0 mkl
bleach 6.1.0 pyhd8ed1ab_0 conda-forge
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blosc 1.21.5 h0f2a231_0 conda-forge
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boost-cpp 1.82.0 h8013b2b_2 conda-forge
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brunsli 0.1 h9c3ff4c_0 conda-forge
bzip2 1.0.8 hd590300_5 conda-forge
c-ares 1.26.0 hd590300_0 conda-forge
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ca-certificates 2023.12.12 h06a4308_0
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charls 2.2.0 h2531618_0
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click 8.1.7 unix_pyh707e725_0 conda-forge
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libpq 16.1 h33b98f1_7 conda-forge
libprotobuf 3.20.3 h3eb15da_0 conda-forge
libsndfile 1.2.2 hc60ed4a_1 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsolv 0.7.27 hfc55251_0 conda-forge
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libsqlite 3.44.2 h2797004_0 conda-forge
libssh2 1.11.0 h0841786_0 conda-forge
libstdcxx-ng 13.2.0 h7e041cc_4 conda-forge
libsystemd0 255 h3516f8a_0 conda-forge
libthrift 0.15.0 h1795dd8_2
libtiff 4.6.0 ha9c0a0a_2 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libwebp 1.3.2 h658648e_1 conda-forge
libwebp-base 1.3.2 h5eee18b_0
libxcb 1.15 h0b41bf4_0 conda-forge
libxcrypt 4.4.36 hd590300_1 conda-forge
libxkbcommon 1.6.0 hd429924_1 conda-forge
libxml2 2.12.4 h232c23b_1 conda-forge
libxslt 1.1.39 h76b75d6_0 conda-forge
libzlib 1.2.13 hd590300_5 conda-forge
libzopfli 1.0.3 h9c3ff4c_0 conda-forge
linkify-it-py 2.0.2 pyhd8ed1ab_0 conda-forge
llvm-openmp 17.0.6 h4dfa4b3_0 conda-forge
llvmlite 0.41.1 py311ha6695c7_0 conda-forge
locket 1.0.0 pyhd8ed1ab_0 conda-forge
lxml 4.9.4 py311h9691dec_0 conda-forge
lz4 4.3.3 py311h38e4bf4_0 conda-forge
lz4-c 1.9.4 hcb278e6_0 conda-forge
lzo 2.10 h516909a_1000 conda-forge
markdown 3.5.2 pyhd8ed1ab_0 conda-forge
markdown-it-py 3.0.0 pyhd8ed1ab_0 conda-forge
markupsafe 2.1.4 py311h459d7ec_0 conda-forge
marshmallow 3.20.2 pyhd8ed1ab_0 conda-forge
mathjax 2.7.7 ha770c72_3 conda-forge
matplotlib 3.8.2 py311h38be061_0 conda-forge
matplotlib-base 3.8.2 py311h54ef318_0 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
mccabe 0.7.0 pyhd8ed1ab_0 conda-forge
mdit-py-plugins 0.4.0 pyhd8ed1ab_0 conda-forge
mdurl 0.1.2 pyhd8ed1ab_0 conda-forge
menuinst 2.0.2 py311h38be061_0 conda-forge
mistune 3.0.2 pyhd8ed1ab_0 conda-forge
mkl 2023.2.0 h84fe81f_50496 conda-forge
mkl-service 2.4.0 py311h6c4e854_1 conda-forge
more-itertools 10.2.0 pyhd8ed1ab_0 conda-forge
mpc 1.3.1 hfe3b2da_0 conda-forge
mpfr 4.2.1 h9458935_0 conda-forge
mpg123 1.32.4 h59595ed_0 conda-forge
mpi 1.0 mpich conda-forge
mpich 4.1.2 h846660c_102 conda-forge
mpmath 1.3.0 pyhd8ed1ab_0 conda-forge
msgpack-python 1.0.7 py311h9547e67_0 conda-forge
multidict 6.0.4 py311h459d7ec_1 conda-forge
multipledispatch 0.6.0 py_0 conda-forge
multiprocess 0.70.15 py311h459d7ec_1 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mypy_extensions 1.0.0 pyha770c72_0 conda-forge
mysql-common 8.0.33 hf1915f5_6 conda-forge
mysql-libs 8.0.33 hca2cd23_6 conda-forge
navigator-updater 0.4.0 py311h06a4308_1
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nbformat 5.9.2 pyhd8ed1ab_0 conda-forge
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nest-asyncio 1.6.0 pyhd8ed1ab_0 conda-forge
networkx 3.2.1 pyhd8ed1ab_0 conda-forge
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ply 3.11 py_1 conda-forge
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pyqt 5.15.9 py311hf0fb5b6_5 conda-forge
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pysocks 1.7.1 pyha2e5f31_6 conda-forge
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python 3.11.7 hab00c5b_1_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-dotenv 1.0.1 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.19.1 pyhd8ed1ab_0 conda-forge
python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge
python-kaleido 0.2.1 pyhd8ed1ab_0 conda-forge
python-libarchive-c 5.0 py311h38be061_2 conda-forge
python-lsp-black 2.0.0 pyhd8ed1ab_0 conda-forge
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python-tzdata 2023.4 pyhd8ed1ab_0 conda-forge
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pytoolconfig 1.2.5 pyhd8ed1ab_0 conda-forge
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pyyaml 6.0.1 py311h459d7ec_1 conda-forge
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qtpy 2.4.1 pyhd8ed1ab_0 conda-forge
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re2 2022.04.01 h27087fc_0 conda-forge
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reproc 14.2.4.post0 hd590300_1 conda-forge
reproc-cpp 14.2.4.post0 h59595ed_1 conda-forge
requests 2.31.0 pyhd8ed1ab_0 conda-forge
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requests-toolbelt 1.0.0 pyhd8ed1ab_0 conda-forge
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scipy 1.12.0 py311h64a7726_2 conda-forge
scrapy 2.11.0 py311h38be061_0 conda-forge
seaborn 0.13.2 hd8ed1ab_0 conda-forge
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semver 2.13.0 pyh9f0ad1d_0 conda-forge
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service-identity 21.1.0 pyhd8ed1ab_0 conda-forge
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setuptools 69.0.3 pyhd8ed1ab_0 conda-forge
sip 6.7.12 py311hb755f60_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
smart_open 6.4.0 pyhd8ed1ab_0 conda-forge
snappy 1.1.10 h9fff704_0 conda-forge
sniffio 1.3.0 pyhd8ed1ab_0 conda-forge
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sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge
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sphinx 7.2.6 pyhd8ed1ab_0 conda-forge
sphinxcontrib-applehelp 1.0.8 pyhd8ed1ab_0 conda-forge
sphinxcontrib-devhelp 1.0.6 pyhd8ed1ab_0 conda-forge
sphinxcontrib-htmlhelp 2.0.5 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jsmath 1.0.1 pyhd8ed1ab_0 conda-forge
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spyder 5.4.3 py311h06a4308_1
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sqlalchemy 2.0.25 py311h459d7ec_0 conda-forge
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sympy 1.12 pypyh9d50eac_103 conda-forge
tabulate 0.9.0 pyhd8ed1ab_1 conda-forge
tbb 2021.8.0 hdb19cb5_0
tbb4py 2021.8.0 py311hdb19cb5_0
tblib 3.0.0 pyhd8ed1ab_0 conda-forge
tenacity 8.2.3 pyhd8ed1ab_0 conda-forge
terminado 0.18.0 pyh0d859eb_0 conda-forge
text-unidecode 1.3 pyhd8ed1ab_1 conda-forge
textdistance 4.5.0 pyhd8ed1ab_0 conda-forge
threadpoolctl 3.2.0 pyha21a80b_0 conda-forge
three-merge 0.1.1 pyh9f0ad1d_0 conda-forge
tifffile 2020.6.3 py_0 conda-forge
tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge
tk 8.6.13 noxft_h4845f30_101 conda-forge
tldextract 5.1.1 pyhd8ed1ab_0 conda-forge
tokenizers 0.15.1 py311h6640629_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tomlkit 0.12.3 pyha770c72_0 conda-forge
toolz 0.12.1 pyhd8ed1ab_0 conda-forge
tornado 6.3.3 py311h459d7ec_1 conda-forge
tqdm 4.66.1 pyhd8ed1ab_0 conda-forge
traitlets 5.14.1 pyhd8ed1ab_0 conda-forge
transformers 4.37.1 pyhd8ed1ab_0 conda-forge
truststore 0.8.0 pyhd8ed1ab_0 conda-forge
twisted 22.10.0 py311hd4cff14_0 conda-forge
types-python-dateutil 2.8.19.20240106 pyhd8ed1ab_0 conda-forge
typing-extensions 4.9.0 hd8ed1ab_0 conda-forge
typing_extensions 4.9.0 pyha770c72_0 conda-forge
typing_inspect 0.9.0 pyhd8ed1ab_0 conda-forge
typing_utils 0.1.0 pyhd8ed1ab_0 conda-forge
tzdata 2023d h0c530f3_0 conda-forge
uc-micro-py 1.0.2 pyhd8ed1ab_0 conda-forge
ujson 5.9.0 py311hb755f60_0 conda-forge
unixodbc 2.3.12 h661eb56_0 conda-forge
uri-template 1.3.0 pyhd8ed1ab_0 conda-forge
urllib3 1.26.18 pyhd8ed1ab_0 conda-forge
utf8proc 2.6.1 h27cfd23_0
w3lib 2.1.2 pyhd8ed1ab_0 conda-forge
watchdog 3.0.0 py311h38be061_1 conda-forge
wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge
webcolors 1.13 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 pyhd8ed1ab_2 conda-forge
websocket-client 1.7.0 pyhd8ed1ab_0 conda-forge
werkzeug 3.0.1 pyhd8ed1ab_0 conda-forge
whatthepatch 1.0.5 pyhd8ed1ab_0 conda-forge
wheel 0.42.0 pyhd8ed1ab_0 conda-forge
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wrapt 1.16.0 py311h459d7ec_0 conda-forge
wurlitzer 3.0.3 pyhd8ed1ab_0 conda-forge
xarray 2024.1.1 pyhd8ed1ab_0 conda-forge
xcb-util 0.4.0 hd590300_1 conda-forge
xcb-util-image 0.4.0 h8ee46fc_1 conda-forge
xcb-util-keysyms 0.4.0 h8ee46fc_1 conda-forge
xcb-util-renderutil 0.3.9 hd590300_1 conda-forge
xcb-util-wm 0.4.1 h8ee46fc_1 conda-forge
xkeyboard-config 2.40 hd590300_0 conda-forge
xorg-compositeproto 0.4.2 h7f98852_1001 conda-forge
xorg-damageproto 1.2.1 h7f98852_1002 conda-forge
xorg-fixesproto 5.0 h7f98852_1002 conda-forge
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xorg-xf86vidmodeproto 2.3.1 h7f98852_1002 conda-forge
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xz 5.4.2 h5eee18b_0
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yarl 1.9.4 py311h459d7ec_0 conda-forge
ypy-websocket 0.8.2 py311h06a4308_0
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zict 3.0.0 pyhd8ed1ab_0 conda-forge
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zlib 1.2.13 hd590300_5 conda-forge
zlib-ng 2.0.7 h0b41bf4_0 conda-forge
zope.interface 6.1 py311h459d7ec_0 conda-forge
zstandard 0.22.0 py311haa97af0_0 conda-forge
zstd 1.5.5 hfc55251_0 conda-forge
Anaconda 2023.09 in Ubuntu 22.04
@ejgutierrez74 I faced a similar problem when the installation of an old version did not fix the problem with pip freeze seeming to confirm the right version being there. The problem was that pip freeze in my case used package version from different sites-packages location than used by tljh. TLJH used directory /opt/tljh/user/lib/python3.9/site-packages/traitlets Checking the version of the package by looking into the _version.py in this directory revealed the new problematic version, overriding this with the older 5.9.0 fixed the problem.
I dont know after upgrading all libraries with conda update conda, and then uninstall Anaconda Tools, seems that with older versions, now its again working, with jupyter lab and jupyter notebook in the main page ready to be launched.....Perhaps and upgrade bug/error...
Probably never guess if not other people facing same problem...Id say its updating problem with Anaconda Tools, anaconda tools is not installed by default...so jupyter lab and jupyter network are not shown in main navigator page ( although they are installed in the environment). Then install anaconda tools make them appear again....and if you uninstall anaconda tool, they remain in the main page...This is my investigation at least...
Version: 6.5.5
I've recently started seeing this error when starting up a Notebook app with package version 6.5.5
import notebook.notebookapp notebook.notebookapp.main()
File "C:\Users\chgagnon\AppData\Roaming\Python\Python38\site-packages\notebook\traittypes.py", line 235, in _resolve_classes klass = self._resolve_string(klass) File "C:\Users\chgagnon\AppData\Roaming\Python\Python38\site-packages\traitlets\traitlets.py", line 2009, in _resolve_string return import_item(string) File "C:\Users\chgagnon\AppData\Roaming\Python\Python38\site-packages\traitlets\utils\importstring.py", line 30, in import_item module = __import__(package, fromlist=[obj]) ModuleNotFoundError: No module named 'jupyter_server.contents'
It seems to be caused by #5957. In it there's two similar lines in different files
This has the type specified as
jupyter_server.contents.services.managers.ContentsManager
(which doesn't seem to be a valid path)it's specified as
jupyter_server.services.contents.manager.ContentsManager
Not sure if I'm missing something, or if this was just a typo but I confirmed that if I go in and manually change the "wrong" name in $(Python)\site-packages\notebook\notebookapp.py to the other name then it seems to start up and everything is fine.
after installing traitlets==5.9.0 everything work fine
after installing traitlets==5.9.0 everything work fine
Version: 6.5.5
I've recently started seeing this error when starting up a Notebook app with package version 6.5.5
It seems to be caused by https://github.com/jupyter/notebook/pull/5957. In it there's two similar lines in different files
https://github.com/jupyter/notebook/pull/5957/files#diff-805382c95cfca475b5339bcb7ccd1ee13e9326a9d15adf3a6419d32cb38024d5R1394
This has the type specified as
jupyter_server.contents.services.managers.ContentsManager
(which doesn't seem to be a valid path)while in https://github.com/jupyter/notebook/pull/5957/files#diff-ba803f92fc3fea5ab9ef22c8064d587d629353f5c9beaa33a809d70dad8cea80R34
it's specified as
jupyter_server.services.contents.manager.ContentsManager
Not sure if I'm missing something, or if this was just a typo but I confirmed that if I go in and manually change the "wrong" name in $(Python)\site-packages\notebook\notebookapp.py to the other name then it seems to start up and everything is fine.