Closed jmjamison closed 4 years ago
Hey @jmjamison, I tried with a DOI from Harvard Dataverse (10.7910/DVN/WIAEL2) and it worked as expected. What's the DOI that you're trying to use from UCLA's Dataverse?
This from UCLA's Dataverse: 10.25346/S6/DE95RT
Thanks for reporting this @jmjamison - it seems like this particular DOI doesn't work :-/
For me https://mybinder.org/v2/dataverse/10.25346/S6/DE95RT/ shows "waiting for build to start". Looking into the server logs I see the following:
binder-7cc47646f4-4gngd binder [E 200728 05:10:30 ioloop:763] Exception in callback functools.partial(<bound method IOLoop._discard_future_result of <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7f8d28079090>>, <Future at 0x7f8d221d8090 state=finished raised ApiException>)
binder-7cc47646f4-4gngd binder Traceback (most recent call last):
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/site-packages/tornado/ioloop.py", line 743, in _run_callback
binder-7cc47646f4-4gngd binder ret = callback()
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/site-packages/tornado/ioloop.py", line 767, in _discard_future_result
binder-7cc47646f4-4gngd binder future.result()
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/concurrent/futures/_base.py", line 428, in result
binder-7cc47646f4-4gngd binder return self.__get_result()
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/concurrent/futures/_base.py", line 384, in __get_result
binder-7cc47646f4-4gngd binder raise self._exception
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/concurrent/futures/thread.py", line 57, in run
binder-7cc47646f4-4gngd binder result = self.fn(*self.args, **self.kwargs)
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/site-packages/binderhub/build.py", line 287, in submit
binder-7cc47646f4-4gngd binder ret = self.api.create_namespaced_pod(self.namespace, self.pod)
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/site-packages/kubernetes/client/apis/core_v1_api.py", line 6115, in create_namespaced_pod
binder-7cc47646f4-4gngd binder (data) = self.create_namespaced_pod_with_http_info(namespace, body, **kwargs)
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/site-packages/kubernetes/client/apis/core_v1_api.py", line 6206, in create_namespaced_pod_with_http_info
binder-7cc47646f4-4gngd binder collection_formats=collection_formats)
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/site-packages/kubernetes/client/api_client.py", line 334, in call_api
binder-7cc47646f4-4gngd binder _return_http_data_only, collection_formats, _preload_content, _request_timeout)
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/site-packages/kubernetes/client/api_client.py", line 168, in __call_api
binder-7cc47646f4-4gngd binder _request_timeout=_request_timeout)
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/site-packages/kubernetes/client/api_client.py", line 377, in request
binder-7cc47646f4-4gngd binder body=body)
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/site-packages/kubernetes/client/rest.py", line 266, in POST
binder-7cc47646f4-4gngd binder body=body)
binder-7cc47646f4-4gngd binder File "/usr/local/lib/python3.7/site-packages/kubernetes/client/rest.py", line 222, in request
binder-7cc47646f4-4gngd binder raise ApiException(http_resp=r)
binder-7cc47646f4-4gngd binder kubernetes.client.rest.ApiException: (422)
binder-7cc47646f4-4gngd binder Reason: Unprocessable Entity
binder-7cc47646f4-4gngd binder HTTP response headers: HTTPHeaderDict({'Audit-Id': '94468cca-0021-47e1-947e-b013fc9a1139', 'Content-Type': 'application/json', 'Date': 'Tue, 28 Jul 2020 05:10:30 GMT', 'Content-Length': '1757'})
binder-7cc47646f4-4gngd binder HTTP response body: {"kind":"Status","apiVersion":"v1","metadata":{},"status":"Failure","message":"Pod \"build-dataverse-2ds6-2d2fde95rt-b4f9c1-20460-\" is invalid: [metadata.name: Invalid value: \"build-dataverse-2ds6-2d2fde95rt-b4f9c1-20460-\": a DNS-1123 subdomain must consist of lower case alphanumeric characters, '-' or '.', and must start and end with an alphanumeric character (e.g. 'example.com', regex used for validation is '[a-z0-9]([-a-z0-9]*[a-z0-9])?(\\.[a-z0-9]([-a-z0-9]*[a-z0-9])?)*'), metadata.labels: Invalid value: \"build-dataverse-2ds6-2d2fde95rt-b4f9c1-20460-\": a valid label must be an empty string or consist of alphanumeric characters, '-', '_' or '.', and must start and end with an alphanumeric character (e.g. 'MyValue', or 'my_value', or '12345', regex used for validation is '(([A-Za-z0-9][-A-Za-z0-9_.]*)?[A-Za-z0-9])?')]","reason":"Invalid","details":{"name":"build-dataverse-2ds6-2d2fde95rt-b4f9c1-20460-","kind":"Pod","causes":[{"reason":"FieldValueInvalid","message":"Invalid value: \"build-dataverse-2ds6-2d2fde95rt-b4f9c1-20460-\": a DNS-1123 subdomain must consist of lower case alphanumeric characters, '-' or '.', and must start and end with an alphanumeric character (e.g. 'example.com', regex used for validation is '[a-z0-9]([-a-z0-9]*[a-z0-9])?(\\.[a-z0-9]([-a-z0-9]*[a-z0-9])?)*')","field":"metadata.name"},{"reason":"FieldValueInvalid","message":"Invalid value: \"build-dataverse-2ds6-2d2fde95rt-b4f9c1-20460-\": a valid label must be an empty string or consist of alphanumeric characters, '-', '_' or '.', and must start and end with an alphanumeric character (e.g. 'MyValue', or 'my_value', or '12345', regex used for validation is '(([A-Za-z0-9][-A-Za-z0-9_.]*)?[A-Za-z0-9])?')","field":"metadata.labels"}]},"code":422}
The problem is that the name ends in a -
. Not quite sure why this happens, so we will have to investigate. Unfortunately there is nothing you can do to work around this :(
I tried the same doi and still stick at waiting to build.
I hope I am putting this in the correct place.
Bug description
I've tried using a jupyter notebook that is in a dataverse repository.
Expected behaviour
I thought the jupyter notebook would open in mybinder web interface
Actual behaviour
Seems stuck at "waiting to start"
How to reproduce
Your personal set up