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fcollonval
jwindgassen
Description
I am trying to create a JupyterLab extension generated with this template, but as soon as I try to execute
pip install -e .(as described in the README), I get yarn errors during thePreparing editable metadatastep.As far as I can tell, yarn has trouble installing downloading/installing packages on our system, but I was unable to find any reason why: All related directories and files are read- and writable and there should be enough diskspace. It might also be an error inside hatch-jupyter-builder or inside the Node.js installation on our system, but I am not able to pinpoint the main culprit for the error.
Options used during cookiecutter:
Context
System: JUWELS Booster (Rocky Linux) JupyterLab Version: 3.6.3 Python Version: 3.10.4 Node.js Version: 16.15.1 Yarn Version: 1.22.19
Log
Command Line Output
Processing /p/home/jusers/windgassen1/juwels/trame/jupyter_viz_extension Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing metadata (pyproject.toml) ... error error: subprocess-exited-with-error × Preparing metadata (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [38 lines of output] INFO:hatch_jupyter_builder.utils:Running jupyter-builder INFO:hatch_jupyter_builder.utils:Building with hatch_jupyter_builder.npm_builder INFO:hatch_jupyter_builder.utils:With kwargs: {'build_cmd': 'build:prod', 'npm': ['jlpm']} INFO:hatch_jupyter_builder.utils:Installing build dependencies with npm. This may take a while... INFO:hatch_jupyter_builder.utils:> /tmp/pip-build-env-yqmk_0cc/overlay/bin/jlpm install yarn install v1.21.1 info No lockfile found. [1/4] Resolving packages... warning @jupyterlab/application > @jupyterlab/apputils > url > querystring@0.2.0: The querystring API is considered Legacy. new code should use the URLSearchParams API instead. warning @jupyterlab/application > @jupyterlab/ui-components > @blueprintjs/core > popper.js@1.16.1: You can find the new Popper v2 at @popperjs/core, this package is dedicated to the legacy v1 warning @jupyterlab/application > @jupyterlab/ui-components > @blueprintjs/core > react-popper > popper.js@1.16.1: You can find the new Popper v2 at @popperjs/core, this package is dedicated to the legacy v1 warning @jupyterlab/builder > terser-webpack-plugin > cacache > @npmcli/move-file@1.1.2: This functionality has been moved to @npmcli/fs [2/4] Fetching packages... error An unexpected error occurred: "https://registry.yarnpkg.com/@typescript-eslint/experimental-utils/-/experimental-utils-4.33.0.tgz: Unknown system error -122: Unknown system error -122, open '/p/home/jusers/windgassen1/juwels/.cache/yarn/v6/npm-@typescript-eslint-experimental-utils-4.33.0-6f2a786a4209fa2222989e9380b5331b2810f7fd-integrity/node_modules/@typescript-eslint/experimental-utils/.yarn-tarball.tgz'". info If you think this is a bug, please open a bug report with the information provided in "/p/home/jusers/windgassen1/juwels/trame/jupyter_viz_extension/yarn-error.log". info Visit https://yarnpkg.com/en/docs/cli/install for documentation about this command. Traceback (most recent call last): File "/p/project/dems/windgassen1/jupyterlab/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in
main()
File "/p/project/dems/windgassen1/jupyterlab/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/p/project/dems/windgassen1/jupyterlab/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 152, in prepare_metadata_for_build_wheel
whl_basename = backend.build_wheel(metadata_directory, config_settings)
File "/tmp/pip-build-env-yqmk_0cc/overlay/lib/python3.10/site-packages/hatchling/build.py", line 56, in build_wheel
return os.path.basename(next(builder.build(wheel_directory, ['standard'])))
File "/tmp/pip-build-env-yqmk_0cc/overlay/lib/python3.10/site-packages/hatchling/builders/plugin/interface.py", line 150, in build
build_hook.initialize(version, build_data)
File "/tmp/pip-build-env-yqmk_0cc/normal/lib/python3.10/site-packages/hatch_jupyter_builder/plugin.py", line 87, in initialize
raise e
File "/tmp/pip-build-env-yqmk_0cc/normal/lib/python3.10/site-packages/hatch_jupyter_builder/plugin.py", line 82, in initialize
build_func(self.target_name, version, **build_kwargs)
File "/tmp/pip-build-env-yqmk_0cc/normal/lib/python3.10/site-packages/hatch_jupyter_builder/utils.py", line 113, in npm_builder
run([*npm_cmd, "install"], cwd=str(abs_path))
File "/tmp/pip-build-env-yqmk_0cc/normal/lib/python3.10/site-packages/hatch_jupyter_builder/utils.py", line 229, in run
return subprocess.check_call(cmd, **kwargs)
File "/p/software/juwelsbooster/stages/2023/software/Python/3.10.4-GCCcore-11.3.0/lib/python3.10/subprocess.py", line 369, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/tmp/pip-build-env-yqmk_0cc/overlay/bin/jlpm', 'install']' returned non-zero exit status 1.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
yarn-error.log
Arguments: /p/software/juwelsbooster/stages/2023/software/nodejs/16.15.1-GCCcore-11.3.0/bin/node /tmp/pip-build-env-yqmk_0cc/overlay/lib/python3.10/site-packages/jupyterlab/staging/yarn.js install PATH: /tmp/pip-build-env-yqmk_0cc/overlay/bin:/tmp/pip-build-env-yqmk_0cc/normal/bin:/p/project/dems/windgassen1/jupyterlab/bin:/p/software/juwelsbooster/stages/2023/software/yarn/1.22.19-GCCcore-11.3.0:/p/software/juwelsbooster/stages/2023/software/yarn/1.22.19-GCCcore-11.3.0/bin:/p/software/juwelsbooster/stages/2023/software/nodejs/16.15.1-GCCcore-11.3.0/bin:/p/software/juwelsbooster/stages/2023/software/Python/3.10.4-GCCcore-11.3.0/bin:/p/software/juwelsbooster/stages/2023/software/OpenSSL/1.1/bin:/p/software/juwelsbooster/stages/2023/software/XZ/5.2.5-GCCcore-11.3.0/bin:/p/software/juwelsbooster/stages/2023/software/SQLite/3.38.3-GCCcore-11.3.0/bin:/p/software/juwelsbooster/stages/2023/software/Tcl/8.6.12-GCCcore-11.3.0/bin:/p/software/juwelsbooster/stages/2023/software/ncurses/6.3-GCCcore-11.3.0/bin:/p/software/juwelsbooster/stages/2023/software/bzip2/1.0.8-GCCcore-11.3.0/bin:/p/software/juwelsbooster/stages/2023/software/binutils/2.38-GCCcore-11.3.0/bin:/p/software/juwelsbooster/stages/2023/software/GCCcore/11.3.0/bin:/p/home/jusers/windgassen1/juwels/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/ddn/ime/bin:/opt/jsc/bin:/usr/local/jsc/bin:/opt/parastation/bin:/p/software/juwelsbooster/bin Yarn version: 1.21.1 Node version: 16.15.1 Platform: linux x64 Trace: Error: Unknown system error -122: Unknown system error -122, open '/p/home/jusers/windgassen1/juwels/.cache/yarn/v6/npm-@typescript-eslint-experimental-utils-4.33.0-6f2a786a4209fa2222989e9380b5331b2810f7fd-integrity/node_modules/@typescript-eslint/experimental-utils/.yarn-tarball.tgz' npm manifest: { "name": "jupyter-viz-extension", "version": "0.1.0", "description": "A JupyterLab extension for easy-to-use browser-based visualization with ParaView trame", "keywords": [ "jupyter", "jupyterlab", "jupyterlab-extension" ], "homepage": "https://github.com/jwindgassen/jupyter-viz-extension", "bugs": { "url": "https://github.com/jwindgassen/jupyter-viz-extension/issues" }, "license": "BSD-3-Clause", "author": { "name": "Jonathan Windgassen", "email": "j.windgassen@fz-juelich.de" }, "files": [ "lib/**/*.{d.ts,eot,gif,html,jpg,js,js.map,json,png,svg,woff2,ttf}", "style/**/*.{css,js,eot,gif,html,jpg,json,png,svg,woff2,ttf}" ], "main": "lib/index.js", "types": "lib/index.d.ts", "style": "style/index.css", "repository": { "type": "git", "url": "https://github.com/jwindgassen/jupyter-viz-extension.git" }, "scripts": { "build": "jlpm build:lib && jlpm build:labextension:dev", "build:prod": "jlpm clean && jlpm build:lib:prod && jlpm build:labextension", "build:labextension": "jupyter labextension build .", "build:labextension:dev": "jupyter labextension build --development True .", "build:lib": "tsc --sourceMap", "build:lib:prod": "tsc", "clean": "jlpm clean:lib", "clean:lib": "rimraf lib tsconfig.tsbuildinfo", "clean:lintcache": "rimraf .eslintcache .stylelintcache", "clean:labextension": "rimraf jupyter_viz_extension/labextension jupyter_viz_extension/_version.py", "clean:all": "jlpm clean:lib && jlpm clean:labextension && jlpm clean:lintcache", "eslint": "jlpm eslint:check --fix", "eslint:check": "eslint . --cache --ext .ts,.tsx", "install:extension": "jlpm build", "lint": "jlpm stylelint && jlpm prettier && jlpm eslint", "lint:check": "jlpm stylelint:check && jlpm prettier:check && jlpm eslint:check", "prettier": "jlpm prettier:base --write --list-different", "prettier:base": "prettier \"**/*{.ts,.tsx,.js,.jsx,.css,.json,.md}\"", "prettier:check": "jlpm prettier:base --check", "stylelint": "jlpm stylelint:check --fix", "stylelint:check": "stylelint --cache \"style/**/*.css\"", "watch": "run-p watch:src watch:labextension", "watch:src": "tsc -w", "watch:labextension": "jupyter labextension watch ." }, "dependencies": { "@jupyterlab/application": "^3.1.0", "@jupyterlab/coreutils": "^5.1.0", "@jupyterlab/services": "^6.1.0" }, "devDependencies": { "@jupyterlab/builder": "^3.1.0", "@typescript-eslint/eslint-plugin": "^4.8.1", "@typescript-eslint/parser": "^4.8.1", "eslint": "^7.14.0", "eslint-config-prettier": "^6.15.0", "eslint-plugin-prettier": "^3.1.4", "mkdirp": "^1.0.3", "npm-run-all": "^4.1.5", "prettier": "^2.1.1", "rimraf": "^3.0.2", "stylelint": "^14.3.0", "stylelint-config-prettier": "^9.0.4", "stylelint-config-recommended": "^6.0.0", "stylelint-config-standard": "~24.0.0", "stylelint-prettier": "^2.0.0", "typescript": "~4.1.3" }, "sideEffects": [ "style/*.css", "style/index.js" ], "styleModule": "style/index.js", "publishConfig": { "access": "public" }, "jupyterlab": { "discovery": { "server": { "managers": [ "pip" ], "base": { "name": "jupyter_viz_extension" } } }, "extension": true, "outputDir": "jupyter_viz_extension/labextension" }, "eslintIgnore": [ "node_modules", "dist", "coverage", "**/*.d.ts" ], "eslintConfig": { "extends": [ "eslint:recommended", "plugin:@typescript-eslint/eslint-recommended", "plugin:@typescript-eslint/recommended", "plugin:prettier/recommended" ], "parser": "@typescript-eslint/parser", "parserOptions": { "project": "tsconfig.json", "sourceType": "module" }, "plugins": [ "@typescript-eslint" ], "rules": { "@typescript-eslint/naming-convention": [ "error", { "selector": "interface", "format": [ "PascalCase" ], "custom": { "regex": "^I[A-Z]", "match": true } } ], "@typescript-eslint/no-unused-vars": [ "warn", { "args": "none" } ], "@typescript-eslint/no-explicit-any": "off", "@typescript-eslint/no-namespace": "off", "@typescript-eslint/no-use-before-define": "off", "@typescript-eslint/quotes": [ "error", "single", { "avoidEscape": true, "allowTemplateLiterals": false } ], "curly": [ "error", "all" ], "eqeqeq": "error", "prefer-arrow-callback": "error" } }, "prettier": { "singleQuote": true, "trailingComma": "none", "arrowParens": "avoid", "endOfLine": "auto" }, "stylelint": { "extends": [ "stylelint-config-recommended", "stylelint-config-standard", "stylelint-prettier/recommended" ], "rules": { "property-no-vendor-prefix": null, "selector-no-vendor-prefix": null, "value-no-vendor-prefix": null } } } yarn manifest: No manifest Lockfile: No lockfile