Closed michaelpginn closed 9 months ago
mbektas
commented
9 months ago @michaelpginn could you try these in a Mac Terminal. do you see any errors when you launch JupyterLab this way?
cd into directory you tried to open in JupyterLab Desktop UI
jlab env activate
jupyter labin the logs, I noticed that python executable was not found at /Users/milesper/Library/jupyterlab-desktop/jlab_server/bin/python. can you double check that?
you can reinstall the bundled environment using jlab env install --force in a Mac terminal. Note that this will first delete the existing installation.
michaelpginn
commented
9 months ago Thanks, that worked! Looks like my jlab_server folder was missing, somehow.
Description
When opening any new folder with JupyterLab, I get the error
Invalid Environment for Projectwith no way to fix the issue.Reproduce
Expected behavior
The invalid environment appears to be the one bundled with the app, so I'm not sure why the error would be occurring. At the very least, there should be a way to switch environments in this case.
Context
Troubleshoot Output
$PATH: /Users/milesper/.pyenv/versions/3.10.0/bin /opt/homebrew/opt/pyenv/libexec /opt/homebrew/opt/pyenv/plugins/python-build/bin /Users/milesper/.meteor /Users/milesper/.pyenv/shims /Users/milesper/.nvm/versions/node/v18.18.0/bin /opt/homebrew/opt/ruby/bin /Users/milesper/Documents/google-cloud-sdk/bin /usr/local/sbin /Users/milesper/.pyenv/versions/3.7.2/bin /Users/milesper/Library/Python/3.7/bin /opt/homebrew/bin /opt/homebrew/sbin /usr/local/bin /System/Cryptexes/App/usr/bin /usr/bin /bin /usr/sbin /sbin /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin /opt/X11/bin /Library/Apple/usr/bin /Library/TeX/texbin /usr/local/share/dotnet ~/.dotnet/tools /Library/Frameworks/Mono.framework/Versions/Current/Commands /Users/milesper/.ebcli-virtual-env/executables /Users/milesper/.pyenv/versions/3.10.0/bin /opt/homebrew/opt/pyenv/libexec /opt/homebrew/opt/pyenv/plugins/python-build/bin /Users/milesper/.meteor /Users/milesper/.nvm/versions/node/v18.18.0/bin /opt/homebrew/opt/ruby/bin /Users/milesper/Documents/google-cloud-sdk/bin /usr/local/sbin /Users/milesper/.pyenv/versions/3.7.2/bin /Users/milesper/Library/Python/3.7/bin /opt/homebrew/bin /opt/homebrew/sbin /Users/milesper/.cargo/bin /node_modules/.bin /Applications/JupyterLab.app/Contents/MacOS /usr/local/smlnj/bin /usr/local/smlnj/bin sys.path: /Users/milesper/.pyenv/versions/3.10.0/bin /Users/milesper/.pyenv/versions/3.10.0/lib/python310.zip /Users/milesper/.pyenv/versions/3.10.0/lib/python3.10 /Users/milesper/.pyenv/versions/3.10.0/lib/python3.10/lib-dynload /Users/milesper/.pyenv/versions/3.10.0/lib/python3.10/site-packages /Users/milesper/.pyenv/versions/3.10.0/lib/python3.10/site-packages/kenlm-0.2.0-py3.10-macosx-14.0-arm64.egg sys.executable: /Users/milesper/.pyenv/versions/3.10.0/bin/python3.10 sys.version: 3.10.0 (default, Sep 29 2023, 17:27:23) [Clang 15.0.0 (clang-1500.0.40.1)] platform.platform(): macOS-14.2.1-arm64-i386-64bit which -a jupyter: /Users/milesper/.pyenv/versions/3.10.0/bin/jupyter /Users/milesper/.pyenv/shims/jupyter /Users/milesper/.pyenv/versions/3.10.0/bin/jupyter pip list: Package Version ---------------------------- -------------------- absl-py 2.0.0 accelerate 0.25.0 aiohttp 3.9.1 aiosignal 1.3.1 annotated-types 0.6.0 anyio 3.7.1 appdirs 1.4.4 appnope 0.1.3 argon2-cffi 23.1.0 argon2-cffi-bindings 21.2.0 arrow 1.3.0 asgiref 3.7.2 asttokens 2.4.0 astunparse 1.6.3 async-lru 2.0.4 async-timeout 4.0.3 attrs 23.1.0 Babel 2.13.0 backcall 0.2.0 beautifulsoup4 4.12.2 bleach 6.1.0 bs4 0.0.1 build 1.0.3 cachetools 5.3.2 certifi 2023.7.22 cffi 1.16.0 charset-normalizer 3.3.0 cldfcatalog 1.5.1 cldfzenodo 2.1.0 click 8.1.7 clldutils 3.20.0 colorama 0.4.6 colorlog 6.7.0 comm 0.1.4 commonnexus 1.9.2 cryptography 41.0.5 csv-diff 1.1 csvw 3.2.1 dataplane 0.1.3 datasets 2.15.0 debugpy 1.8.0 decorator 5.1.1 defusedxml 0.7.1 dictdiffer 0.9.0 dill 0.3.7 distlib 0.3.7 distro 1.8.0 dj-database-url 2.1.0 Django 4.2.6 djangorestframework 3.14.0 dm-tree 0.1.8 docker-pycreds 0.4.0 docopt 0.6.2 evaluate 0.4.1 exceptiongroup 1.1.3 executing 2.0.0 fastjsonschema 2.18.1 filelock 3.12.4 fire 0.5.0 flatbuffers 23.5.26 fqdn 1.5.1 frozenlist 1.4.0 fsspec 2023.9.2 gast 0.5.4 gensim 4.3.2 gitdb 4.0.11 GitPython 3.1.40 google-auth 2.25.2 google-auth-oauthlib 1.2.0 google-pasta 0.2.0 graphviz 0.20.1 grpcio 1.60.0 gunicorn 21.2.0 h11 0.14.0 h5py 3.10.0 httpcore 1.0.2 httpx 0.25.2 huggingface-hub 0.19.4 hypothesis 6.88.1 idna 3.4 inquirerpy 0.3.4 install 1.3.5 ipykernel 6.25.2 ipython 8.16.1 ipywidgets 8.1.1 iso639-lang 2.2.2 isodate 0.6.1 isoduration 20.11.0 jedi 0.19.1 Jinja2 3.1.2 jmespath 1.0.1 joblib 1.3.2 json5 0.9.14 jsonpointer 2.4 jsonschema 4.19.1 jsonschema-specifications 2023.7.1 jupyter 1.0.0 jupyter_client 8.3.1 jupyter-console 6.6.3 jupyter_core 5.4.0 jupyter-events 0.7.0 jupyter-lsp 2.2.0 jupyter_server 2.7.3 jupyter_server_terminals 0.4.4 jupyterlab 4.0.6 jupyterlab-pygments 0.2.2 jupyterlab_server 2.25.0 jupyterlab-widgets 3.0.9 kagglehub 0.1.5 kenlm 0.2.0 keras 3.0.2 keras-core 0.1.7 keras-nightly 3.0.3.dev2023123003 keras-nlp 0.7.0 langid 1.1.6 language-tags 1.2.0 latexcodec 2.0.1 lexical-diversity 0.1.1 libclang 16.0.6 linglit 1.5.0 lxml 4.9.3 Markdown 3.5.1 markdown-it-py 3.0.0 MarkupSafe 2.1.3 matplotlib-inline 0.1.6 mdurl 0.1.2 mistune 3.0.2 ml-dtypes 0.3.1 mpmath 1.3.0 multidict 6.0.4 multiprocess 0.70.15 nameparser 1.1.3 namex 0.0.7 nbclient 0.8.0 nbconvert 7.9.2 nbformat 5.9.2 nest-asyncio 1.5.8 networkx 3.2.1 newick 1.9.0 nltk 3.8.1 notebook 7.0.6 notebook_shim 0.2.3 numpy 1.26.2 oauthlib 3.2.2 openai 1.3.6 opt-einsum 3.3.0 overrides 7.4.0 packaging 23.2 pandas 2.1.3 pandocfilters 1.5.0 parso 0.8.3 pexpect 4.8.0 pfzy 0.3.4 pickleshare 0.7.5 Pillow 10.0.1 pip 23.3.2 pipenv 2023.10.24 pipreqs 0.4.13 platformdirs 3.11.0 plotly 5.18.0 portalocker 2.8.2 prometheus-client 0.17.1 prompt-toolkit 3.0.32 protobuf 4.23.4 psutil 5.9.5 psycopg2-binary 2.9.9 ptyprocess 0.7.0 pure-eval 0.2.2 purl 1.6 pyarrow 14.0.1 pyarrow-hotfix 0.6 pyasn1 0.5.1 pyasn1-modules 0.3.0 pybtex 0.24.0 pycldf 1.36.0 pycountry 22.3.5 pycparser 2.21 pyctcdecode 0.5.0 pydantic 2.5.2 pydantic_core 2.14.5 pyfoma 1.0.4 pyglottolog 3.12.0 Pygments 2.17.2 pygtrie 2.5.0 pyigt 2.1.0 pylatexenc 2.10 PyMySQL 1.1.0 pyparsing 3.1.1 pyproject_hooks 1.0.0 python-dateutil 2.8.2 python-frontmatter 1.0.1 python-json-logger 2.0.7 pytz 2023.3.post1 PyYAML 6.0.1 pyzmq 25.1.1 qtconsole 5.5.1 QtPy 2.4.1 rapidfuzz 3.5.2 rdflib 7.0.0 referencing 0.30.2 regex 2023.10.3 requests 2.31.0 requests-oauthlib 1.3.1 responses 0.18.0 rfc3339-validator 0.1.4 rfc3986 1.5.0 rfc3986-validator 0.1.1 rich 13.7.0 rpds-py 0.10.4 rsa 4.9 sacrebleu 2.3.3 safetensors 0.4.0 scikit-learn 1.3.1 scipy 1.11.3 segments 2.2.1 semantic-code-search 0.4.0 Send2Trash 1.8.2 sentence-transformers 2.2.2 sentencepiece 0.1.99 sentry-sdk 1.38.0 setproctitle 1.3.3 setuptools 68.2.2 six 1.16.0 smart-open 6.4.0 smmap 5.0.1 sniffio 1.3.0 sortedcontainers 2.4.0 soundfile 0.12.1 soupsieve 2.5 SQLAlchemy 1.4.50 sqlparse 0.4.4 stack-data 0.6.3 svgling 0.4.0 svgwrite 1.4.3 sympy 1.12 tabulate 0.9.0 tb-nightly 2.16.0a20231230 tenacity 8.2.3 tensorboard 2.15.1 tensorboard-data-server 0.7.2 tensorflow-estimator 2.15.0 tensorflow-io-gcs-filesystem 0.34.0 termcolor 2.3.0 terminado 0.17.1 TexSoup 0.3.1 tf-estimator-nightly 2.14.0.dev2023080308 tf_keras-nightly 2.16.0.dev2023123010 tf-nightly 2.16.0.dev20231230 tf-nightly-macos 2.16.0.dev20231230 thefuzz 0.20.0 threadpoolctl 3.2.0 tinycss2 1.2.1 tokenizers 0.15.0 tomli 2.0.1 torch 2.1.2 torchdata 0.7.1 torchtext 0.16.2 torchvision 0.14.1 tornado 6.3.3 tqdm 4.66.1 traitlets 5.11.2 transformers 4.35.2 tree-sitter 0.20.1 tree-sitter-builds 2022.8.27 tree-sitter-languages 1.5.0 types-python-dateutil 2.8.19.14 typing_extensions 4.8.0 tzdata 2023.3 Unidecode 1.3.7 uri-template 1.3.0 uritemplate 4.1.1 urllib3 2.0.6 virtualenv 20.24.6 wandb 0.16.0 wcwidth 0.2.8 webcolors 1.13 webencodings 0.5.1 websocket-client 1.6.4 Werkzeug 3.0.1 wheel 0.42.0 Whoosh 2.7.4 widgetsnbextension 4.0.9 wrapt 1.14.1 xxhash 3.4.1 yarg 0.1.9 yarl 1.9.3Browser Output (required for interface issues after loading)
Logs (required for issues with loading, server and startup)
[2024-01-27 13:38:03.983] [info] In production mode [2024-01-27 13:38:03.992] [info] Logging to file (/Users/milesper/Library/Logs/jupyterlab-desktop/main.log) at 'debug' level [2024-01-27 13:38:04.003] [error] Python path "/Users/milesper/Library/jupyterlab-desktop/jlab_server/bin/python" does not exist. [2024-01-27 13:38:04.017] [info] feedURL https://update.electronjs.org/jupyterlab/jupyterlab-desktop/darwin-x64/4.0.11-1 [2024-01-27 13:38:04.018] [info] requestHeaders { 'User-Agent': 'update-electron-app/2.0.1 (darwin: x64)' } [2024-01-27 13:38:05.268] [info] checking-for-update [2024-01-27 13:38:06.019] [info] update-not-available [2024-01-27 13:38:07.533] [debug] Server launch script: source "/Users/milesper/.pyenv/bin/activate" python -m jupyterlab --no-browser --expose-app-in-browser --ServerApp.port=53832 --ServerApp.password="" --ServerApp.token="jlab:srvr:703f5bfb41db34f03f4e6f2aab68071eb65cc5" --LabApp.quit_button=False --JupyterApp.config_file_name="" --ContentsManager.allow_hidden=True [2024-01-27 13:38:07.535] [debug] Server launch parameters: [script]: /var/folders/1y/v6m6qm2d3p52jn2sv6smp5cr0000gn/T/jlab_desktopJf6EJ6/launch.sh [options]: {"cwd":"/Users/milesper","shell":"/bin/bash","env":{"NVM_INC":"/Users/milesper/.nvm/versions/node/v18.18.0/include/node","MANPATH":"/Users/milesper/.nvm/versions/node/v18.18.0/share/man:/opt/homebrew/share/man::","TERM_PROGRAM":"Apple_Terminal","NVM_CD_FLAGS":"-q","TERM":"xterm-256color","SHELL":"/bin/zsh","HOMEBREW_REPOSITORY":"/opt/homebrew","TMPDIR":"/var/folders/1y/v6m6qm2d3p52jn2sv6smp5cr0000gn/T/","TERM_PROGRAM_VERSION":"452","TERM_SESSION_ID":"33CCEA7D-ACAB-4202-AA55-A6A76DF379DB","NVM_DIR":"/Users/milesper/.nvm","USER":"milesper","SSH_AUTH_SOCK":"/private/tmp/com.apple.launchd.o8hFM0an4g/Listeners","PATH":"/Users/milesper/.meteor:/Users/milesper/.pyenv/shims:/Users/milesper/.nvm/versions/node/v18.18.0/bin:/opt/homebrew/opt/ruby/bin:/Users/milesper/Documents/google-cloud-sdk/bin:/usr/local/sbin:/Users/milesper/.pyenv/versions/3.7.2/bin:/Users/milesper/Library/Python/3.7/bin:/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/opt/X11/bin:/Library/Apple/usr/bin:/Library/TeX/texbin:/usr/local/share/dotnet:~/.dotnet/tools:/Library/Frameworks/Mono.framework/Versions/Current/Commands:/Users/milesper/.ebcli-virtual-env/executables:/Users/milesper/Documents/School/STAT 5630 - Bayesian Modeling/node_modules/.bin:/Users/milesper/Documents/School/node_modules/.bin:/Users/milesper/Documents/node_modules/.bin:/Users/milesper/node_modules/.bin:/Users/node_modules/.bin:/node_modules/.bin:/Applications/JupyterLab.app/Contents/MacOS:/Users/milesper/.meteor:/Users/milesper/.nvm/versions/node/v18.18.0/bin:/opt/homebrew/opt/ruby/bin:/Users/milesper/Documents/google-cloud-sdk/bin:/usr/local/sbin:/Users/milesper/.pyenv/versions/3.7.2/bin:/Users/milesper/Library/Python/3.7/bin:/opt/homebrew/bin:/opt/homebrew/sbin:/Users/milesper/.cargo/bin:/usr/local/smlnj/bin:/usr/local/smlnj/bin","LaunchInstanceID":"F1966646-E611-4680-8313-E6F0AF531522","__CFBundleIdentifier":"com.apple.Terminal","PWD":"/Users/milesper/Documents/School/STAT 5630 - Bayesian Modeling","LANG":"en_US.UTF-8","XPC_FLAGS":"0x0","XPC_SERVICE_NAME":"0","PYENV_SHELL":"zsh","HOME":"/Users/milesper","SHLVL":"2","HOMEBREW_PREFIX":"/opt/homebrew","LOGNAME":"milesper","NVM_BIN":"/Users/milesper/.nvm/versions/node/v18.18.0/bin","INFOPATH":"/opt/homebrew/share/info:","HOMEBREW_CELLAR":"/opt/homebrew/Cellar","DISPLAY":"/private/tmp/com.apple.launchd.yZ3hS8W6WE/org.macosforge.xquartz:0","SECURITYSESSIONID":"186b3","_":"/Applications/JupyterLab.app/Contents/MacOS/JupyterLab","__CF_USER_TEXT_ENCODING":"0x1F5:0x0:0x0","ORIGINAL_XDG_CURRENT_DESKTOP":"undefined","JUPYTER_CONFIG_DIR":"/Users/milesper/Library/Application Support/jupyterlab-desktop","JUPYTERLAB_WORKSPACES_DIR":"/Users/milesper/.jupyter/desktop-workspaces"}} [2024-01-27 13:38:10.060] [error] Python path "/Users/milesper/Library/jupyterlab-desktop/jlab_server/bin/python" does not exist.