Open lukelbd opened 5 months ago
Here is more context (github gave me comment-too-long errors).
$PATH: /Users/ldavis/mambaforge/bin /Users/ldavis/mambaforge/condabin /Users/ldavis/bin /Users/ldavis/.local/bin /Users/ldavis/.iterm2 /Users/ldavis/nvim/bin /Users/ldavis/go/bin /Users/ldavis/node/bin /Users/ldavis/.deno/bin /Users/ldavis/.rvm/gems/ruby-2.6.0/bin /Users/ldavis/.rvm/gems/ruby-2.6.0@global/bin /Users/ldavis/.rvm/rubies/ruby-2.6.0/bin /Users/ldavis/.rvm/bin /Applications/Calibre.app/Contents/MacOS /Applications/Skim.app/Contents/SharedSupport /Applications/Skim.app/Contents/MacOS /Users/ldavis/builds/ncl-6.6.2/bin /Users/ldavis/builds/matlab-r2019a/bin /opt/pgi/osx86-64/2018/bin /usr/local/opt/coreutils/libexec/gnubin /usr/local/opt/findutils/libexec/gnubin /usr/local/opt/gnu-sed/libexec/gnubin /usr/local/opt/gnu-tar/libexec/gnubin /usr/local/opt/grep/libexec/gnubin /usr/local/bin /opt/local/bin /opt/local/sbin /opt/X11/bin /Library/TeX/texbin /usr/bin /bin /usr/sbin /sbin /Users/ldavis/.fzf/bin sys.path: /Users/ldavis/mambaforge/bin /Users/ldavis/research/carbon-cycle /Users/ldavis/research/hierarchy /Users/ldavis/research/constraints /Users/ldavis/research/persistence /Users/ldavis/research/timescales /Users/ldavis/shared/coupled /Users/ldavis/shared/idealized /Users/ldavis/shared/observed /Users/ldavis/shared/cmip-data /Users/ldavis/shared/climate-data /Users/ldavis/mambaforge/lib/python310.zip /Users/ldavis/mambaforge/lib/python3.10 /Users/ldavis/mambaforge/lib/python3.10/lib-dynload /Users/ldavis/mambaforge/lib/python3.10/site-packages /Users/ldavis/forks/cdo-bindings/python /Users/ldavis/forks/matplotlib_iterm2 sys.executable: /Users/ldavis/mambaforge/bin/python sys.version: 3.10.13 | packaged by conda-forge | (main, Oct 26 2023, 18:09:20) [Clang 16.0.6 ] platform.platform(): macOS-14.5-x86_64-i386-64bit which -a jupyter: /Users/ldavis/mambaforge/bin/jupyter /usr/local/bin/jupyter pip list: Package Version Editable project location --------------------------------- ------------------- ------------------------------------- aiobotocore 2.2.0 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libopenblas-ilp64=0.3.21=openmp_h2dcd37a_1 - libosxunwind=0.0.6=h940c156_0 - libpng=1.6.39=ha978bb4_0 - libpq=14.5=h9dc22bb_6 - libprotobuf=3.21.12=h7d26f99_2 - librsvg=2.54.4=h3d48ba6_0 - libsodium=1.0.18=hbcb3906_1 - libsolv=0.7.22=hd9580d2_0 - libsqlite=3.43.2=h92b6c6a_0 - libssh2=1.11.0=hd019ec5_0 - libthrift=0.18.1=h88b220a_2 - libtiff=4.4.0=hfca7e8f_0 - libtool=2.4.6=he49afe7_1008 - libunistring=0.9.10=h0d85af4_0 - libutf8proc=2.8.0=hb7f2c08_0 - libuv=1.43.0=h0d85af4_0 - libvpx=1.11.0=he49afe7_3 - libwebp=1.2.2=h28dabe5_0 - libwebp-base=1.2.2=h0d85af4_1 - libxcb=1.13=h0d85af4_1004 - libxml2=2.9.14=h1faee8b_4 - libxslt=1.1.33=h1acebb3_3 - libzip=1.10.1=hc158999_3 - libzlib=1.2.13=hfd90126_4 - llvm-openmp=16.0.5=hff08bdf_0 - llvmlite=0.40.1=py310hd8379ad_0 - locket=1.0.0=pyhd8ed1ab_0 - lxml=4.8.0=py310h1961e1f_2 - lz4=4.3.2=py310h8d4e1d9_0 - lz4-c=1.9.3=he49afe7_1 - lzo=2.10=haf1e3a3_1000 - magics=4.12.0=h395abf9_1 - magics-python=1.5.6=pyhd8ed1ab_0 - mamba=1.1.0=py310h6bde348_2 - 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ncview=2.1.8=hfaf4442_4 - nest-asyncio=1.5.5=pyhd8ed1ab_0 - netcdf-fortran=4.6.0=mpi_mpich_hddcf434_2 - nettle=3.6=hedd7734_0 - nodeenv=1.6.0=pyhd8ed1ab_0 - nodejs=17.8.0=h8f7c3f9_0 - notebook=6.5.5=pyha770c72_0 - notebook-shim=0.2.3=pyhd8ed1ab_0 - nspr=4.32=hcd9eead_1 - nss=3.77=hfce436b_0 - numba=0.57.0=py310he09a53b_2 - olefile=0.46=pyh9f0ad1d_1 - openblas-ilp64=0.3.21=openmp_ha601604_1 - openh264=2.1.1=hfd3ada9_0 - openjpeg=2.4.0=h6e7aa92_1 - openlibm=0.8.1=h0d85af4_0 - openpyxl=3.1.2=py310h6729b98_0 - openssl=3.1.5=h87427d6_1 - orc=1.8.3=hec59b76_1 - ossuuid=1.6.2=h0a44026_1000 - overrides=7.4.0=pyhd8ed1ab_0 - p7zip=16.02=he49afe7_1001 - packaging=23.1=pyhd8ed1ab_0 - pandas=1.4.2=py310h514ec25_1 - pandoc=2.17.1.1=h694c41f_0 - pandoc-crossref=0.3.12.2=h694c41f_1 - pandocfilters=1.5.0=pyhd8ed1ab_0 - pango=1.50.7=hc4a7b6d_0 - parallelio=2.5.10=mpi_mpich_h80ddffd_100 - parquet-cpp=1.5.1=2 - parso=0.8.3=pyhd8ed1ab_0 - partd=1.2.0=pyhd8ed1ab_0 - pathspec=0.9.0=pyhd8ed1ab_0 - patsy=0.5.3=pyhd8ed1ab_0 - pcre=8.45=he49afe7_0 - pcre2=10.40=h1c4e4bc_0 - pep517=0.12.0=py310h2ec42d9_2 - perl=5.32.1=2_h0d85af4_perl5 - pexpect=4.8.0=pyh9f0ad1d_2 - pickleshare=0.7.5=py_1003 - pillow=9.2.0=py310hb3240ae_0 - pint=0.19.2=pyhd8ed1ab_0 - pint-pandas=0.5=pyhd8ed1ab_0 - pint-xarray=0.2.1=pyhd8ed1ab_0 - pip=22.0.4=pyhd8ed1ab_0 - pixman=0.40.0=hbcb3906_0 - pkg-config=0.29.2=ha3d46e9_1008 - pkginfo=1.8.2=pyhd8ed1ab_0 - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0 - platformdirs=2.5.1=pyhd8ed1ab_0 - pluggy=1.0.0=py310h2ec42d9_3 - pooch=1.6.0=pyhd8ed1ab_0 - poppler=20.12.1=h19fa4f2_3 - poppler-data=0.4.11=hd8ed1ab_0 - pre-commit=2.19.0=py310h2ec42d9_0 - prettier=2.6.2=hda8ccec_0 - proj=9.0.1=h05f0992_1 - prometheus_client=0.14.1=pyhd8ed1ab_0 - prompt-toolkit=3.0.39=pyha770c72_0 - prompt_toolkit=3.0.39=hd8ed1ab_0 - psutil=5.9.0=py310h1961e1f_1 - pthread-stubs=0.4=hc929b4f_1001 - ptyprocess=0.7.0=pyhd3deb0d_0 - pure_eval=0.2.2=pyhd8ed1ab_0 - py=1.11.0=pyh6c4a22f_0 - pybind11-abi=4=hd8ed1ab_3 - pycairo=1.21.0=py310h5138a19_1 - pycodestyle=2.11.1=pyhd8ed1ab_0 - pycosat=0.6.3=py310h1961e1f_1010 - pycparser=2.21=pyhd8ed1ab_0 - pydocstyle=6.3.0=pyhd8ed1ab_0 - pyflakes=3.1.0=pyhd8ed1ab_0 - pygments=2.16.1=pyhd8ed1ab_0 - pygobject=3.42.0=py310hb7eb778_2 - pylint=2.13.9=pyhd8ed1ab_1 - pynco=1.1.0=pyhd8ed1ab_1 - pynvim=0.4.3=pyhd8ed1ab_1 - pyobjc-core=9.2=py310hef2d279_0 - pyobjc-framework-cocoa=9.2=py310hef2d279_0 - pyopenssl=24.0.0=pyhd8ed1ab_0 - pyparsing=3.0.8=pyhd8ed1ab_0 - pyproj=3.4.0=py310h28b859a_0 - pyqt=5.12.3=py310h2ec42d9_8 - pyqt-impl=5.12.3=py310hea9ccf3_8 - pyqt5-sip=4.19.18=py310hd046c34_8 - pyqtchart=5.12=py310hea9ccf3_8 - pyqtwebengine=5.12.1=py310hea9ccf3_8 - pyrsistent=0.18.1=py310h1961e1f_1 - pyshp=2.3.1=pyhd8ed1ab_0 - pysocks=1.7.1=py310h2ec42d9_5 - pytest=7.1.2=py310h2ec42d9_0 - python=3.10.13=h00d2728_0_cpython - python-build=0.7.0=pyhd8ed1ab_0 - python-cdo=1.6.0=pyhd8ed1ab_0 - python-dateutil=2.8.2=pyhd8ed1ab_0 - python-fastjsonschema=2.15.3=pyhd8ed1ab_0 - python-json-logger=2.0.7=pyhd8ed1ab_0 - python-lsp-jsonrpc=1.1.2=pyhd8ed1ab_0 - python-lsp-server=1.8.2=pyhd8ed1ab_0 - python-lsp-server-base=1.8.2=pyhd8ed1ab_0 - python-snappy=0.6.0=py310h98adc32_2 - python.app=1.4=py310he24745e_0 - python_abi=3.10=2_cp310 - pytoolconfig=1.2.4=pyhd8ed1ab_0 - pytz=2022.1=pyhd8ed1ab_0 - pyyaml=6.0=py310h1961e1f_4 - pyzmq=24.0.1=py310hf615a82_1 - qt=5.12.9=h2a607e2_5 - qtpy=2.0.1=pyhd8ed1ab_0 - re2=2023.02.02=hf0c8a7f_0 - readline=8.2=h9e318b2_1 - referencing=0.30.2=pyhd8ed1ab_0 - reproc=14.2.3=h0d85af4_0 - reproc-cpp=14.2.3=he49afe7_0 - requests=2.31.0=pyhd8ed1ab_0 - requests-toolbelt=0.9.1=py_0 - rfc3339-validator=0.1.4=pyhd8ed1ab_0 - rfc3986-validator=0.1.1=pyh9f0ad1d_0 - rich=12.3.0=pyhd8ed1ab_0 - ripgrep=13.0.0=hbbacdb1_2 - rope=1.10.0=pyhd8ed1ab_0 - rpds-py=0.10.3=py310h3461e44_0 - ruamel_yaml=0.15.80=py310he24745e_1006 - s3fs=2022.3.0=pyhd8ed1ab_0 - scipy=1.10.1=py310h3900cf1_3 - seaborn=0.12.2=hd8ed1ab_0 - seaborn-base=0.12.2=pyhd8ed1ab_0 - send2trash=1.8.2=pyhd1c38e8_0 - setuptools=62.3.2=py310h2ec42d9_0 - setuptools-scm=6.4.2=pyhd8ed1ab_0 - setuptools_scm=6.4.2=hd8ed1ab_0 - setuptools_scm_git_archive=1.1=py_0 - simplejson=3.17.6=py310h1961e1f_1 - six=1.15.0=pyh9f0ad1d_0 - snappy=1.1.10=h225ccf5_0 - sniffio=1.2.0=py310h2ec42d9_3 - snowballstemmer=2.2.0=pyhd8ed1ab_0 - sortedcontainers=2.4.0=pyhd8ed1ab_0 - soupsieve=2.3.1=pyhd8ed1ab_0 - sparse=0.14.0=pyhd8ed1ab_0 - sphinx=7.2.6=pyhd8ed1ab_0 - sphinxcontrib-applehelp=1.0.2=py_0 - sphinxcontrib-devhelp=1.0.2=py_0 - sphinxcontrib-htmlhelp=2.0.0=pyhd8ed1ab_0 - sphinxcontrib-jsmath=1.0.1=py_0 - sphinxcontrib-qthelp=1.0.3=py_0 - sphinxcontrib-serializinghtml=1.1.9=pyhd8ed1ab_0 - sqlite=3.43.2=h7461747_0 - stack_data=0.2.0=pyhd8ed1ab_0 - statsmodels=0.14.0=py310hc1335a1_1 - suitesparse=5.10.1=h7aff33d_1 - svt-av1=0.9.1=h96cf925_0 - tbb=2021.9.0=hb8565cd_0 - tblib=1.7.0=pyhd8ed1ab_0 - tempest-remap=2.1.6=hab39229_1 - termcolor=1.1.0=py_2 - terminado=0.15.0=py310h2ec42d9_0 - testpath=0.6.0=pyhd8ed1ab_0 - the_silver_searcher=2.2.0=h7b53cd4_1001 - thrift=0.16.0=py310h9d931ec_1 - tinycss2=1.1.1=pyhd8ed1ab_0 - tk=8.6.13=h1abcd95_1 - tmux=3.4=h5e661ee_0 - toml=0.10.2=pyhd8ed1ab_0 - tomli=2.0.1=pyhd8ed1ab_0 - toolz=0.11.2=pyhd8ed1ab_0 - tornado=6.3.2=py310h6729b98_0 - tqdm=4.64.0=pyhd8ed1ab_0 - traitlets=5.9.0=pyhd8ed1ab_0 - typed-ast=1.5.3=py310h1961e1f_0 - typing-extensions=4.2.0=hd8ed1ab_1 - typing_extensions=4.2.0=pyha770c72_1 - typing_utils=0.1.0=pyhd8ed1ab_0 - tzdata=2022a=h191b570_0 - udunits2=2.2.28=h06ef574_0 - ujson=5.3.0=py310hd4537e4_0 - ukkonen=1.0.1=py310h6be76da_2 - unicodedata2=14.0.0=py310h1961e1f_1 - universal-ctags=5.9.20220918.0=h148c6df_0 - urllib3=1.26.9=pyhd8ed1ab_0 - vim=9.1.0356=py310pl5321h0325407_0 - virtualenv=20.14.1=py310h2ec42d9_0 - wcwidth=0.2.5=pyh9f0ad1d_2 - webcolors=1.13=pyhd8ed1ab_0 - webencodings=0.5.1=py_1 - websocket-client=1.3.2=pyhd8ed1ab_0 - wget=1.20.3=hd3787cc_1 - whatthepatch=1.0.5=pyhd8ed1ab_0 - wheel=0.37.1=pyhd8ed1ab_0 - wrapt=1.14.1=py310h6c45266_0 - x264=1!161.3030=h0d85af4_1 - x265=3.5=hbb4e6a2_3 - xarray=0.21.1=pyhd8ed1ab_0 - xorg-kbproto=1.0.7=h35c211d_1002 - xorg-libice=1.0.10=h0d85af4_0 - xorg-libsm=1.2.3=h0d85af4_1000 - xorg-libx11=1.7.2=h0d85af4_0 - xorg-libxau=1.0.9=h35c211d_0 - xorg-libxdmcp=1.1.3=h35c211d_0 - xorg-libxext=1.3.4=h0d85af4_1 - xorg-libxrender=0.9.10=h0d85af4_1003 - xorg-libxt=1.2.1=h0d85af4_2 - xorg-renderproto=0.11.1=h0d85af4_1002 - xorg-xextproto=7.3.0=h35c211d_1002 - xorg-xproto=7.0.31=h35c211d_1007 - xyzservices=2023.7.0=pyhd8ed1ab_0 - xz=5.2.6=h775f41a_0 - y-py=0.5.9=py310hb28ce15_0 - yaml=0.2.5=h0d85af4_2 - yaml-cpp=0.7.0=hb486fe8_1 - yapf=0.33.0=pyhd8ed1ab_1 - yarl=1.7.2=py310h1961e1f_2 - ypy-websocket=0.8.2=pyhd8ed1ab_0 - zeromq=4.3.4=he49afe7_1 - zict=3.0.0=pyhd8ed1ab_0 - zipp=3.8.0=pyhd8ed1ab_0 - zlib=1.2.13=hfd90126_4 - zstd=1.5.6=h915ae27_0 - pip: - ansicolor==0.3.2 - async-lru==2.0.2 - basemap==1.3.6 - basemap-data==1.3.2 - binary==1.0.0 - cachetools==5.3.0 - cattrs==23.1.2 - cf-xarray==0.7.5 - chardet==5.0.0 - climopy==0.1.0.post388+dirty - dataproperty==0.55.0 - docopt==0.6.2 - dominate==2.7.0 - doq==0.10.0 - esgf-pyclient==0.3.1 - exceptiongroup==1.1.1 - executing==1.2.0 - flake8-unused-arguments==0.0.12 - google-api-core==2.11.0 - google-auth==2.16.2 - google-cloud-bigquery==3.7.0 - google-cloud-core==2.3.2 - google-crc32c==1.5.0 - google-resumable-media==2.4.1 - googleapis-common-protos==1.59.0 - grpcio==1.51.3 - grpcio-status==1.51.3 - httpcore==0.16.3 - httpx==0.23.3 - ipython==8.15.0.dev0 - jinja2==3.0.0 - jsonpointer==2.3 - matplotlib==3.5.3 - mbstrdecoder==1.1.2 - myproxyclient==2.1.0 - netcdf4==1.6.4 - numpy==1.23.5 - pandoc-eqnos==2.5.0 - pandoc-fignos==2.4.0 - pandoc-secnos==2.2.2 - pandoc-tablenos==2.3.0 - pandoc-xnos==2.5.0 - pathvalidate==2.5.2 - pdfminer==20191125 - pip-chill==1.0.3 - prettytable==3.6.0 - proplot==0.9.5.post367+dirty - proto-plus==1.22.2 - protobuf==4.22.1 - pyarrow==11.0.0 - pyasn1==0.4.8 - pyasn1-modules==0.2.8 - pycryptodome==3.18.0 - pypinfo==21.0.0 - pypistats==1.2.1 - pytablewriter==0.64.2 - pytest-mpl==0.14.dev33+g2bded70 - python-slugify==8.0.1 - requests-cache==1.0.1 - rfc3986==1.5.0 - rsa==4.9 - shapely==1.6.4 - tabledata==1.3.1 - tcolorpy==0.1.2 - text-unidecode==1.3 - tinydb==4.7.1 - tinyrecord==0.2.0 - typepy==1.3.0 - uri-template==1.2.0 - url-normalize==1.4.3 - vim-vint==0.3.21 - webob==1.8.7 prefix: /Users/ldavis/mambaforge
Paste the logs from the `main.log` file here (optionally also from `renderer.log`). [2024-06-03 18:58:12.928] [error] Handling request in the main instance. [2024-06-03 18:58:13.642] [warn] Unsatisfied version 4.3.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/apputils (required ^3.6.1) [2024-06-03 18:58:13.644] [warn] Unsatisfied version 4.2.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/codeeditor (required ^3.6.1) [2024-06-03 18:58:13.644] [warn] Unsatisfied version 4.2.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/notebook (required ^3.6.1) [2024-06-03 18:58:13.644] [warn] Unsatisfied version 4.2.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/rendermime (required ^3.6.1) [2024-06-03 18:58:13.644] [warn] Unsatisfied version 4.2.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/translation (required ^3.6.1) [2024-06-03 18:58:13.644] [warn] Unsatisfied version 4.2.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/ui-components (required ^3.6.1) [2024-06-03 18:58:13.645] [warn] Unsatisfied version 4.2.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/statusbar (required ^3.6.1) [2024-06-03 18:58:13.645] [warn] Unsatisfied version 7.2.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/services (required ^6.6.1) [2024-06-03 18:58:13.645] [warn] Unsatisfied version 18.2.0 from @jupyterlab/application-top of shared singleton module react (required ^17.0.1) [2024-06-03 18:58:13.645] [warn] Unsatisfied version 2.3.2 from @jupyterlab/application-top of shared singleton module @lumino/widgets (required ^1.37.1) [2024-06-03 18:58:13.645] [warn] Unsatisfied version 4.2.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/translation (required ^3.6.1) [2024-06-03 18:58:13.645] [warn] Unsatisfied version 4.3.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/apputils (required ^3.6.1) [2024-06-03 18:58:13.646] [warn] Unsatisfied version 4.2.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/ui-components (required ^3.6.1) [2024-06-03 18:58:13.646] [warn] Unsatisfied version 2.1.2 from @jupyterlab/application-top of shared singleton module @lumino/coreutils (required ^1.11.0) [2024-06-03 18:58:13.646] [warn] Unsatisfied version 2.1.2 from @jupyterlab/application-top of shared singleton module @lumino/signaling (required ^1.10.0) [2024-06-03 18:58:13.646] [warn] Unsatisfied version 4.2.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/notebook (required ^3.6.1) [2024-06-03 18:58:13.646] [warn] Unsatisfied version 6.2.1 from @jupyterlab/application-top of shared singleton module @jupyterlab/coreutils (required ^5.6.1) [2024-06-03 18:58:14.197] [warn] [object Object] [2024-06-03 18:58:14.223] [warn] Language pack 'en' not installed! [2024-06-03 18:58:14.450] [warn] LSP.SettingsSchemaManager: No config schema - skipping transformation for jedi-language-server [2024-06-03 18:58:14.727] [warn] Could not get context [2024-06-03 19:02:33.584] [error] (node:78929) UnhandledPromiseRejectionWarning: TypeError: Cannot read properties of undefined (reading 'workingDirectory') at /Applications/JupyterLab.app/Contents/Resources/app.asar/build/out/main/sessionwindow/sessionwindow.js:1031:55 (Use `JupyterLab --trace-warnings ...` to show where the warning was created) [2024-06-03 19:02:33.585] [error] (node:78929) UnhandledPromiseRejectionWarning: Unhandled promise rejection. This error originated either by throwing inside of an async function without a catch block, or by rejecting a promise which was not handled with .catch(). To terminate the node process on unhandled promise rejection, use the CLI flag `--unhandled-rejections=strict` (see https://nodejs.org/api/cli.html#cli_unhandled_rejections_mode). (rejection id: 1) [2024-06-03 19:02:33.585] [error] Handling request in the main instance.
Does connecting via the "Connect..." dialog work for you in that case? Is this only CLI that does not work?
Yep the GUI "connect" interface works -- only the jlab
command fails.
Having this would just be a minor convenience -- currently when connecting to more than one server I have to: Click hamburger menu -> click "new window..." -> click "connect..." -> copy-paste the server. But with jlab <server>
I can write a .bashrc
function that just pops open the new server in the app after calling jupyter lab
.
Description
Connecting to a server with e.g.
jlab http://localhost:2001/lab?token=<token>
fails when the jupyterlab desktop app is already open.Reproduce
jupyter lab
jlab <address>
from terminalLauncher
pageExpected behavior
The desktop app successfully connects to the server, auto-opens the previously-opened notebooks. Running
jlab <address>
before opening the app will connect successfully.Context
.dmg