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justin13601 / ACES

ACES: Automatic Cohort Extraction System for Event-Streams
https://eventstreamaces.readthedocs.io/en/latest/
MIT License
25 stars 1 forks source link

added storage functionality for raw windows #121

Closed Oufattole closed 3 months ago

Oufattole commented 3 months ago

Resolves issue #97

Summary by CodeRabbit

coderabbitai[bot] commented 3 months ago

Walkthrough

The changes introduce new configuration options for specifying a directory and filename for storing window statistics, enhancing output handling capabilities. The main function has been updated to include logic for creating directories and writing the result DataFrame to a Parquet file when specified paths are provided. Additionally, a new test function has been implemented to validate the command-line interface for processing medication data and ensure the correct functionality of output file generation.

Changes

File Change Summary
src/aces/__main__.py Added conditional blocks to check for window_stats_filepath and window_stats_dir, writing result DataFrame to a specified Parquet file.
src/aces/configs/aces.yaml Introduced window_stats_dir, window_stats_filename, and modified window_stats_filepath for configurable output file handling.
tests/test_meds.py Added test_meds_window_storage function to validate CLI handling of medication data and output file generation.

Poem

🐇 In the fields where data flows,
A new path for stats now grows.
With files that gleam in Parquet's light,
Our rabbit code hops to new heights.
Testing the meds with joy and cheer,
Output's clear, the vision's near! 🥕✨

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justin13601 commented 3 months ago

This is meant to save the original structs for the contrastive learning use case mentioned earlier right?

Edit: oops sorry, I missed this at the top, yes it resolves #97.