To visualise the impact of matrix optimisation, align the final matrices selected by optimize-matrices-FA with the input matrices.
Note that compare-matrices does a 1-to-N alignment rather than a clustering, but this will be more appropriate to see the relationship between each final motif and one or several similar motif(s) in the input data.
To visualise the impact of matrix optimisation, align the final matrices selected by
optimize-matrices-FA
with the input matrices.Note that compare-matrices does a 1-to-N alignment rather than a clustering, but this will be more appropriate to see the relationship between each final motif and one or several similar motif(s) in the input data.