Open jyaacoub opened 1 month ago
Transcript_ID
Everything from how to load up TCGA, adding cancer type info, and plotting figures should be available in https://github.com/jyaacoub/MutDTA/blob/main/tcga_analysis.py.
Relevant functions are:
load_TCGA
normalized_heatmap
Feel free to modify whatever you need to, everything is already tracked with git so even if you delete the whole file it wont matter.
code
prot_id
gene_name
TCGA heatmap has a couple issues that need to be addressed:
Transcript_ID
for MANE to get the gene length for normalizing counts byScope
Everything from how to load up TCGA, adding cancer type info, and plotting figures should be available in https://github.com/jyaacoub/MutDTA/blob/main/tcga_analysis.py.
Relevant functions are:
load_TCGA
for loading TCGA and adding cancer type infonormalized_heatmap
for plotting the normalized heatmapFeel free to modify whatever you need to, everything is already tracked with git so even if you delete the whole file it wont matter.
Files needed: