This required some re-writing of code, especially with PDB parser and interfacing with ProDy's calcCrossCorr.
Main changes
src.utils.Chain class for holding pdb file info (mimics ProDy's AtomGroup class)
src.feature_extraction.protein_edges.get_target_edge_weights fn for calculating ProDy edges and for af2 confirmations which is being worked on currently
Added prody edge weight as an option in datasets.
This required some re-writing of code, especially with PDB parser and interfacing with ProDy's
calcCrossCorr.Main changes
src.utils.Chainclass for holding pdb file info (mimics ProDy'sAtomGroupclass)src.feature_extraction.protein_edges.get_target_edge_weightsfn for calculating ProDy edges and for af2 confirmations which is being worked on currently