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jyyulab / SJARACNe

Scalable Tool for Gene Network Reverse Engineering
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Issue: Permission denied #11

Closed MingBit closed 5 years ago

MingBit commented 5 years ago

Hallo,

Thanks for the great development. I'm testing this package with example code shown in the main page. Here comes an issue of Permission denied. Sudo couldn't fix the issue.

Any ideas? many thanks.

adamdingliang commented 5 years ago

Hi,

As I cannot reproduce your problem in my computing environment, can you be more specific about the issue? Like which platform were you trying to install? Where did you install?

Thanks!

MingBit commented 5 years ago

thanks for the fast response! I was testing on Linux and docker container. Package was downloaded via git clone git clone https://github.com/jyyulab/SJARACNe ;

installed by pip install **-r** requirements.txt (python-igraph==0.7.1.post6)

set up by python setup.py install

tested by sjaracne TF test_data/inputs/BRCA100.exp .test_data/inputs/tf.txt test_data/outputs/

Issue: test_data/outputs/SJARACNE_TF/SJARACNE_scripts/02_bootstrap_TF.sh: 70: test_data/outputs/SJARACNE_TF/SJARACNE_scripts/02_bootstrap_TF.sh: sjaracne.linux: Permission denied

adamdingliang commented 5 years ago

By default, sjaracne.linux will be installed to the site-packages directory in your python. You may check the permission of the binary there. Or you may try to rebuild sjaracne.linux using the Makefile before the installing.

MingBit commented 5 years ago

okay. . I also gave the full permission to folders test_data and SJARACNE/SJARACNE/bin it didn't work either :(