Closed adamdingliang closed 5 years ago
stderr from QC_input.py: INFO:root:Word with spaces is: T-Cell Receptor V-alpha region Error - spaces are not allowed, only tabs can delimit input file. Space found in line 5209
Input file: /research/rgs01/project_space/yu3grp/Network_JY/yu3grp/LiangDing/chemoresistance-brca/TCGA/TCGA_V201503_TN_139/project_2019-06-10/SJAR/project_2019-06-10/input.exp
Line caused the error: 5209 uc001wck.3 T-Cell Receptor V-alpha region -1.941198646 -3.321928095 -1.845287186 -0.748795977 -0.945637712 0.138552375 0.51 1872807 -1.859352207 -0.0932633 -2.061902439 -1.73552362 2.064158564 1.072586047 -0.50512362 -3.321928095 -1.415807142 -1.18311 3626 -2.908334012 3.15849861 -2.277184274 -2.556393349 -3.321928095 -1.467134497 -0.640703741 0.071076162 0.148478616 -2.447721309 -0.828536944 -0.170881104 -1.605595615 0.176195095 -0.496549491 0.908736064 -3.321928095 -0.50021788 -1.31652 8107 -1.673922915 -2.694321257 -3.321928095 -2.330610338 0.114766793 0.016924144 -1.528240258 -1.338615224 -1.829818542 0.482332021 -1.140189435 -2.625044004 -1.840112521 1.339536494 0.517628449 -3.321928095 0.762391341 1.460742564 -1.214909845 -0.025764396 -1.213236379 -0.101907764 -0.421785835 -0.095419565 -2.490050854 -0.63039393 -1.855692533 -1.227692025 -0.560642822 -2.826232932 -2.684086035 -0.851781728 -3.320486121 2.297426221 -1.61396164 0.477055566 -2.28208783 -0.68663 8041 0.661293556 0.311968051 0.211635253 -0.026792846 -1.694788224 -1.549197847 1.166136966 -2.027969116 -2.535331733 -1.3 15091517 -2.126580497 -0.539938979 -0.16909569 0.673737315 0.259302621 -3.321928095 0.862590248 -1.306145098 -0.75097949 -2.0 23269779 0.018776585 -1.837532132 -0.725231434 -1.499401876 -0.053194294 -0.356975042 -0.579059544 -0.122334266 0.06 8739591 -0.062806289 1.327284963 0.115565996 -0.778679693 -0.716196729 -2.240588467 -2.883635243 0.616357697 0.054084393 -0.5 60855624 0.455439015 -0.776948212 -2.881507374 0.543297901 0.16812853 2.218502209 1.046979908 0.317998618 -2.915935735 -0.59815 1125 -0.612858072 -2.600336696 -2.14369151 -2.682232861 -2.019170379 -0.142098604 -0.277708858 -0.460568189 -1.76709 3699 2.191278379 -1.737446573 -0.171693386 -1.247080179 1.597888675 -0.977383621 0.540324906
stderr from QC_input.py: INFO:root:Word with spaces is: T-Cell Receptor V-alpha region Error - spaces are not allowed, only tabs can delimit input file. Space found in line 5209
Input file: /research/rgs01/project_space/yu3grp/Network_JY/yu3grp/LiangDing/chemoresistance-brca/TCGA/TCGA_V201503_TN_139/project_2019-06-10/SJAR/project_2019-06-10/input.exp
Line caused the error: 5209 uc001wck.3 T-Cell Receptor V-alpha region -1.941198646 -3.321928095 -1.845287186 -0.748795977 -0.945637712 0.138552375 0.51 1872807 -1.859352207 -0.0932633 -2.061902439 -1.73552362 2.064158564 1.072586047 -0.50512362 -3.321928095 -1.415807142 -1.18311 3626 -2.908334012 3.15849861 -2.277184274 -2.556393349 -3.321928095 -1.467134497 -0.640703741 0.071076162 0.148478616 -2.447721309 -0.828536944 -0.170881104 -1.605595615 0.176195095 -0.496549491 0.908736064 -3.321928095 -0.50021788 -1.31652 8107 -1.673922915 -2.694321257 -3.321928095 -2.330610338 0.114766793 0.016924144 -1.528240258 -1.338615224 -1.829818542 0.482332021 -1.140189435 -2.625044004 -1.840112521 1.339536494 0.517628449 -3.321928095 0.762391341 1.460742564 -1.214909845 -0.025764396 -1.213236379 -0.101907764 -0.421785835 -0.095419565 -2.490050854 -0.63039393 -1.855692533 -1.227692025 -0.560642822 -2.826232932 -2.684086035 -0.851781728 -3.320486121 2.297426221 -1.61396164 0.477055566 -2.28208783 -0.68663 8041 0.661293556 0.311968051 0.211635253 -0.026792846 -1.694788224 -1.549197847 1.166136966 -2.027969116 -2.535331733 -1.3 15091517 -2.126580497 -0.539938979 -0.16909569 0.673737315 0.259302621 -3.321928095 0.862590248 -1.306145098 -0.75097949 -2.0 23269779 0.018776585 -1.837532132 -0.725231434 -1.499401876 -0.053194294 -0.356975042 -0.579059544 -0.122334266 0.06 8739591 -0.062806289 1.327284963 0.115565996 -0.778679693 -0.716196729 -2.240588467 -2.883635243 0.616357697 0.054084393 -0.5 60855624 0.455439015 -0.776948212 -2.881507374 0.543297901 0.16812853 2.218502209 1.046979908 0.317998618 -2.915935735 -0.59815 1125 -0.612858072 -2.600336696 -2.14369151 -2.682232861 -2.019170379 -0.142098604 -0.277708858 -0.460568189 -1.76709 3699 2.191278379 -1.737446573 -0.171693386 -1.247080179 1.597888675 -0.977383621 0.540324906