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jyyulab / SJARACNe

Scalable Tool for Gene Network Reverse Engineering
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sjaracne.exe not found #19

Closed fossbert closed 5 years ago

fossbert commented 5 years ago

Hi there ! I'm having trouble getting SJARACNe to work. Using Ubuntu 18.04 and python3.6(.8) , I first built SJARACNe from source using the commands specified in the instructions. After changing permission rights for all scripts in /usr/local/lib/python3.6/dist-packages/SJARACNe-0.2.0-py3.6.egg/SJARACNe/bin, I could move forward a little bit.

Now I'm getting the an 'sjaracne.exe' error thrown at me, see output attached. I cannot find it anywhere and noticed it got removed during development ?

Any suggestions are much appreciated.

SJARACNe-Fail.txt

adamdingliang commented 5 years ago

We removed the compiled binary from the repo (not the best practice) and added "build" option to setup.py. You can use "python setup.py build" to build "sjaracne.exe".

I have added "python setup.py build" to README.md.

fossbert commented 5 years ago

It's running now, this seems to have done the job. Many thanks !

adamdingliang commented 5 years ago

Great!