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jyyulab / SJARACNe

Scalable Tool for Gene Network Reverse Engineering
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ERROR Exception while running job #35

Closed hyosilpro closed 2 years ago

hyosilpro commented 3 years ago

I got error

i have install from source and then run

sjaracne local -e ./test_data/inputs/BRCA100.exp -g ./test_data/inputs/tf.txt -n 2 -o ./test_data/outputs/cwl/cwltool/SJARACNE_out.final

but i got the below error subprocess.CalledProcessError: Command '['cwltool', '--parallel', '--outdir', './test_data/outputs/cwl/cwltool/SJARACNE_out.final',

lulugato12 commented 3 years ago

@hyosilpro I installed using pip and got the same error. I ran it in Windows.

Also this: raise ValidationException("Not found: '%s'" % argsworkflow) schema_salad.exceptions.ValidationException: Not found: 'c:usershpanaconda3envssjaracnelibsite-packagesSJARACNe/cwl/sjaracne_workflow.cwl'

lulugato12 commented 3 years ago

@hyosilpro Same error here: https://github.com/jyyulab/SJARACNe/issues/22#issue-537296986 It seems that it has to do with Windows 😪

hyosilpro commented 3 years ago

@hyosilpro Same error here: #22 (comment) It seems that it has to do with Windows 😪

Thank, we have to :(

adamdingliang commented 2 years ago

Yes, I already answer this question in #22 . A possible walkaround Install WSL was suggested by @j-andrews7 in #22 . Or install a virtual Linux OS under Windows using VMware or Virtual Box.

adamdingliang commented 2 years ago

Close this issue. Please reopen if the problem persists. Thanks.