Thanks for your great algorithms! When running on large datasets (~300k cells), it seems bootstraps were terminated by signal: SIGTERM after running for some time and permanent fails were reported. I tested my environment by running on testdata and small datastes (~30k cells) which finished perfectly.
The log shows as follows:
[1;30mINFO[0m`` [job bootstrap_17] Max memory used: 96MiB
[1;30mWARNING[0m [33m[job bootstrap_17] was terminated by signal: SIGTERM[0m
[1;30mERROR[0m [31m[job bootstrap_17] Job error:
("Error collecting output for parameter 'out_adj': ../../.conda/envs/py38/lib/python3.8/site-packages/SJARACNe-0.2.1-py3.8.egg/SJARACNe/cwl/sjaracne.cwl:85:7: Did not find output file with glob pattern: '['TF_run_017.adj']'.", {})[0m
[1;30mWARNING[0m [33m[job bootstrap_17] completed permanentFail[0m
[1;30mINFO[0m [job bootstrap_81] /home/NetBID/test/NetBID2_STS_test_2024-05-29/SJAR/tmp/q07t37fr$ sjaracne.exe \
I also tired sample my dataset down to 40% of cells, yet this issue persists. Any suggestions on this issue would be helpful.
Thanks for your great algorithms! When running on large datasets (~300k cells), it seems bootstraps were terminated by signal: SIGTERM after running for some time and permanent fails were reported. I tested my environment by running on testdata and small datastes (~30k cells) which finished perfectly. The log shows as follows:
I also tired sample my dataset down to 40% of cells, yet this issue persists. Any suggestions on this issue would be helpful.