To resolve #8, in which model_labels was default to None, causing genomeplot function to throw out error when plotting: TypeError: 'NoneType' object is not iterable
Change in orca_predict.py:
The model_labels are set when checking the custom_models parameter.
if not using custom_models, model_labels = ["H1-ESC", "HFF"];
if use custom_models, check if model_labels are provided, if not, initiate model_labels to be "Model 1", "Model 2", ..., according to the custom_models length.
This model_labels setting is updated in the following functions: process_region, process_dup, process_del, process_inv, process_ins, process_custom, process_single_breakpoint, process_seqstr.
Update 2: Seqstr installation guide
orca_predict.py: update the seqstr installation to pip install seqstr, as seqstr has been published as a pip package.
orca_env_part2.yml: add pip and seqstr via pip to package list.
Update 1: model_labels setting
To resolve #8, in which model_labels was default to None, causing genomeplot function to throw out error when plotting:
TypeError: 'NoneType' object is not iterableChange in orca_predict.py:
The
model_labelsare set when checking thecustom_modelsparameter.This
model_labelssetting is updated in the following functions: process_region, process_dup, process_del, process_inv, process_ins, process_custom, process_single_breakpoint, process_seqstr.Update 2: Seqstr installation guide
pip install seqstr, as seqstr has been published as a pip package.