How to produce directed minimum spanning tree?

jzhoulab / quasildr

Quasilinear data representations for single-cell omics data analysis

https://quasildr.readthedocs.io/en/latest/main.html

BSD 3-Clause Clear License

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How to produce directed minimum spanning tree? #4

Open zczali4403 opened 1 month ago

zczali4403 commented 1 month ago

Hi,

Thank you for producing and maintaining this package; it gives me a good insight into lineage trending. I have a question: The object g_mst produced by StructDR seems to be an undirected minimum spanning tree; how can I modify the raw code to produce a directed minimum spanning tree?

Best regards, Chengzhi Zhao

zczali4403 commented 1 month ago

I want to use the information on the stage of every cell to produce a directed minimum spanning tree so that it can be ensured that every cell can be connected by stage. Could you please help me? Thank you very much!