Make a pseudo Hi-C matrix for testing

k-kitai / TensorBalancing.jl

An implementation of tensor balancing in Julia.

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Make a pseudo Hi-C matrix for testing #1

Open k-kitai opened 6 years ago

k-kitai commented 6 years ago

Raw Hi-C matrix is usually huge and tedious to generate from sequencing data available online. A sample of Hi-C matrix, maybe pseudo one, is convenient for debugging.

k-kitai commented 6 years ago

OpenMM Polymer contains an example code which run a MD simulation of "beads-on-a-string" model of chromatin. This can produce various size of pseudo Hi-C matrices.