This commit re-implements the tumor boundary as a MultiLineString
object. The marker-positive multiline string contains the lines
belonging to marker-positive blocks, and similar for marker-negative.
Additionally, this commit fixes the tumor microenvironment calculation.
Now, it is a dilation of the tumor exterior, not of the entire tumor
polygon. This means that now, we should not be selecting cells inside
the tumor region (only within the microenvironment.
kaczmarj
commented
3 years ago
This commit re-implements the tumor boundary as a MultiLineString object. The marker-positive multiline string contains the lines belonging to marker-positive blocks, and similar for marker-negative.
Additionally, this commit fixes the tumor microenvironment calculation. Now, it is a dilation of the tumor exterior, not of the entire tumor polygon. This means that now, we should not be selecting cells inside the tumor region (only within the microenvironment.