kad-ecoli / python_scripts

scripts for parsing PDB, fasta, and GO
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pdb2sarst maxASA #3

Open kad-ecoli opened 6 years ago

kad-ecoli commented 6 years ago

Chothia C. The nature of accessible and buried surfaces in proteins. J Mol Biol 1976; 105: 1–14.

kad-ecoli commented 6 years ago

Or the one used in "sa2c" in addss.pl of hhsuite: my %maxsa = (A=>106, B=>160, C=>135, D=>163, E=>194, F=>197, G=>84, H=>184, I=>169, K=>205, L=>164, M=>188, N=>157, P=>136, Q=>198, R=>248, S=>130, T=>142, V=>142, W=>227, X=>180, Y=>222, Z=>196); # maximum solvent accessiblity