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kaifuchenlab / MEBOCOST

BSD 3-Clause "New" or "Revised" License
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question about which expression data that can be used with this tool #3

Closed billqiao1991 closed 3 months ago

billqiao1991 commented 3 months ago

Hello, thank you for developing this interesting tool. I have a question I would like to ask. In the step '1.2 get expression and cell annotation from external files' in the code you provided, is the expression data using counts, data, or scale.data? I am using 10x data. Thanks for any help you can provide!

zhengrongbin commented 3 months ago

Hi, Please use the normalized expression data. Based on my understanding of Seurat, you can used expression data from data slot. Thanks!

Hello, thank you for developing this interesting tool. I have a question I would like to ask. In the step '1.2 get expression and cell annotation from external files' in the code you provided, is the expression data using counts, data, or scale.data? I am using 10x data. Thanks for any help you can provide!