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kaistcbfg / HiCAN

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how to generate the tab-separated Hi-C interaction table #2

Open YuhePei opened 1 week ago

YuhePei commented 1 week ago

Hi, kaistcbfg I'm new for inter-chromosomal interactions analysis and I'm trying to normalize a Micro-C data using HiCAN. my question is that after generate pairs file using pairtools and remove all intra-chromosomes, what can I do to generate the tab-separated Hi-C interaction table, which is the input of HiCAN input? is there any software or scripts can be used? Any suggestion will be grateful.

YuhePei commented 6 days ago

Hi, kaistcbfg I'm new for inter-chromosomal interactions analysis and I'm trying to normalize a Micro-C data using HiCAN. my question is that after generate pairs file using pairtools and remove all intra-chromosomes, what can I do to generate the tab-separated Hi-C interaction table, which is the input of HiCAN input? is there any software or scripts can be used? Any suggestion will be grateful.

Is there anybody get back to me?